New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221992 =858 (5.000)19 (0.110) 8/162 23.6 0.03 coding (665/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222125 197 (0.930)coding (532/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

GACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC....................................................................  <  NC_014034/222036‑221992
................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGG  <  NC_014034/222125‑222077
                                             |||||||||||||||||||                                                 
cccgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCA              <  1:3010524/97‑1 (MQ=0)
cacgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCA              >  1:2450362/5‑101 (MQ=2)
cacgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCA              >  1:3321531/5‑101 (MQ=2)
 acgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCAC             <  2:3867369/98‑1 (MQ=0)
 aatGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCcc             >  2:2470955/4‑99 (MQ=0)
  cgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG            <  1:2171812/99‑1 (MQ=0)
   gGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACGGATCCCACGG           >  2:3486168/2‑101 (MQ=0)
    GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA          >  2:55833/1‑101 (MQ=0)
    GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA          >  2:2775555/1‑101 (MQ=0)
    GATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGA          <  1:950765/101‑1 (MQ=0)
      TCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAtc        <  1:1209236/101‑3 (MQ=0)
       ccgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCC       <  2:3334779/98‑1 (MQ=0)
       ccgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCC       <  1:1136406/98‑1 (MQ=0)
        cgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCG      <  2:2140190/99‑1 (MQ=0)
        cgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCG      <  2:171835/99‑1 (MQ=0)
         gACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGA     >  1:2758331/2‑101 (MQ=0)
          ACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGAC    <  1:3073678/101‑1 (MQ=0)
            GGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGgccg  >  1:559045/1‑97 (MQ=2)
            GGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACcg  >  1:290911/1‑99 (MQ=9)
                                             |||||||||||||||||||                                                 
GACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC....................................................................  <  NC_014034/222036‑221992
................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGG  <  NC_014034/222125‑222077

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG