New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	42 (0.200)	28 (0.130)	3/196	31.3	0.26	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2341510	119 (0.560)					intergenic (‑61/+9)	purQ/purS	phosphoribosylformylglycinamidine synthase subunit PurQ/phosphoribosylformylglycinamidine synthase subunit PurS
Rejected: Position hash score below cutoff.

TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCG....................................................................................................  >  NC_014034/2330074‑2330175 ....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTGC  <  NC_014034/2341510‑2341411                                                                                                                                                                                                               GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGG                                                                                                    <  1:3054466/101‑1 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGg                                                                                                 >  2:783732/1‑100 (MQ=1)       TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCCGGGGg                                                                                                 >  2:938380/1‑100 (MQ=1)        GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCt                                                                                                <  1:2023306/101‑2 (MQ=1)         GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtc                                                                                               <  2:3030/101‑3 (MQ=1)         GCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtc                                                                                               <  2:2589968/101‑3 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                              <  1:3210951/101‑4 (MQ=1)          CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCtcc                                                                                              <  1:1738679/101‑4 (MQ=1)             CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCgcgc                                                                                           >  1:2374538/1‑97 (MQ=0)             CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCC                                                                                           <  1:2267797/101‑1 (MQ=31)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  1:612223/101‑1 (MQ=32)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  2:3896242/101‑1 (MQ=32)                CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCC                                                                                        <  2:3529538/101‑1 (MQ=32)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCG                                                                                       <  2:2913913/101‑1 (MQ=32)                 CAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCGCCGCCCCCc                                                                                       >  2:1376707/1‑100 (MQ=1)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGGGCCGCCCCCcc                                                                                      >  1:2500242/1‑99 (MQ=0)                  AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGc                                                                                      <  1:1201300/101‑2 (MQ=32)                   AGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGca                                                                                     <  2:531145/101‑3 (MQ=32)                     GGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACC                                                                                   <  2:804673/101‑1 (MQ=32)                         GCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCG                                                                               <  1:3678837/101‑1 (MQ=32)                           AACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGC                                                                             <  2:2471634/101‑1 (MQ=32)                              GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTA                                                                          <  1:676115/101‑1 (MQ=32)                              GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTA                                                                          <  1:1937040/101‑1 (MQ=32)                              GGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTA                                                                          <  1:111910/101‑1 (MQ=32)                               GCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAT                                                                         >  2:1130215/1‑101 (MQ=32)                                 GCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTT                                                                       <  2:2662518/101‑1 (MQ=32)                                  CGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTG                                                                      <  1:2927213/101‑1 (MQ=14)                                   GCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGc                                                                     <  1:2508570/101‑2 (MQ=11)                                                                                                                                                                                                            TCGGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGCG....................................................................................................  >  NC_014034/2330074‑2330175 ....................................................................................................CGGGGGCGCTGCCCCCGGACCCCCGGCGTATTTGAGCCAAGAAAAAGCAGGAGCCCTTTCGCGATGAAAGCCGCCGTCATCACCTTTCCGGGGTCGAACTGC  <  NC_014034/2341510‑2341411 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG