New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 799078	98 (0.530)	42 (0.230)	16/174	19.6	0.32	intergenic (+109/‑19)	sucB/lpdA1	dihydrolipoyllysine‑residue succinyltransferase/dihydrolipoyl dehydrogenase
	?	NC_014034	1640019 =	77 (0.360)					intergenic (+99/‑46)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

CTGATCCTTCCCGATGCCGCAGGGGGCGGCGATCCGCCCCCTTCCTGCAAACCGCTCCCCTTTCATCTTGCTGAAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCA....................................................................................................  >  NC_014034/798966‑799078 ....................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATC  >  NC_014034/1640019‑1640118                                                                                                                                                                                                                                                                                  CTTTCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGA                                                       >  1:2484647/1‑101 (MQ=1)                                                             TTTCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAT                                                      >  1:2824194/1‑101 (MQ=1)                                                              TTCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATG                                                     >  1:1091080/1‑101 (MQ=1)                                                              TTCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATG                                                     >  2:3563178/1‑101 (MQ=1)                                                               TCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGT                                                    >  1:15707/1‑101 (MQ=1)                                                               TCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGT                                                    >  1:1838639/1‑101 (MQ=1)                                                               TCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGT                                                    >  1:2241139/1‑101 (MQ=1)                                                                CATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGgt                                                   >  1:980072/1‑99 (MQ=1)                                                                CATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTT                                                   >  1:204490/1‑101 (MQ=1)                                                                CATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTT                                                   >  2:1963307/1‑101 (MQ=1)                                                                CATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTT                                                   >  2:1814031/1‑101 (MQ=1)                                                                 ATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTT                                                  >  1:3487541/1‑101 (MQ=1)                                                                  tcttgccccAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTC                                                 >  2:4220085/10‑101 (MQ=1)                                                                  tcttgccccAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTC                                                 >  2:3738016/10‑101 (MQ=1)                                                                   cttgccccAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCTCCGGCCGTTGACGAAGGAGACCGCGATGTTTCA                                                >  1:3643864/9‑101 (MQ=1)                                                                   cttgccccAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGAGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCA                                                >  2:1398167/9‑101 (MQ=1)                                                                     tgccccAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGCAGACCGCGATGTTTCAAA                                              >  1:4015837/7‑101 (MQ=1)                                                                       ccccAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAG                                            >  2:1861649/5‑101 (MQ=1)                                                                           AAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCC                                        >  1:939176/1‑101 (MQ=1)                                                                           AAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCC                                        >  2:3708778/1‑101 (MQ=1)                                                                            AATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCT                                       >  1:2303192/1‑101 (MQ=1)                                                                             ATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTG                                      >  2:47642/1‑101 (MQ=1)                                                                             ATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTG                                      >  1:2178667/1‑101 (MQ=1)                                                                              TATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGTCGAAGGAGACCGCGATGTTTCAAAAGATCCTGA                                     >  1:3677459/1‑101 (MQ=1)                                                                               ATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAT                                    >  1:4056427/1‑101 (MQ=1)                                                                               ATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAT                                    >  2:2341522/1‑101 (MQ=1)                                                                                 nCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCNGATCn                                  >  1:963020/2‑100 (MQ=1)                                                                                  CCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCNGTTGACGAAGGNGACCGCGATGTNTCAAAAGATCCTGATCGC                                 >  1:247721/1‑101 (MQ=1)                                                                                    GGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAACGCGATGTTTCAAAAGATCCTGATCGCCA                               >  2:527490/1‑101 (MQ=1)                                                                                     GGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAA                              >  2:3486806/1‑101 (MQ=1)                                                                                      GGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAAC                             >  2:853025/1‑101 (MQ=1)                                                                                       GGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA                            >  2:2985159/1‑101 (MQ=1)                                                                                       GGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA                            >  2:2196054/1‑101 (MQ=1)                                                                                           CCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC                        >  1:3313296/1‑101 (MQ=1)                                                                                            CGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC                       >  2:1975314/1‑101 (MQ=1)                                                                                             GGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGGCG                      >  2:3565146/1‑101 (MQ=1)                                                                                             GGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG                      >  2:4049892/1‑101 (MQ=1)                                                                                             GGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG                      >  2:1130248/1‑101 (MQ=1)                                                                                                GGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGA                   >  2:2053851/1‑101 (MQ=1)                                                                                                   CAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCG                >  2:306223/1‑101 (MQ=1)                                                                                                    AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC               >  1:2273980/1‑101 (MQ=1)                                                                                                    AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC               >  2:4070547/1‑101 (MQ=1)                                                                                                                                                                                                                       CTGATCCTTCCCGATGCCGCAGGGGGCGGCGATCCGCCCCCTTCCTGCAAACCGCTCCCCTTTCATCTTGCTGAAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCA....................................................................................................  >  NC_014034/798966‑799078 ....................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCCTGTCGGGTGATC  >  NC_014034/1640019‑1640118 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG