BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 378843	157 (0.820)	2 (0.010)	2/180	31.1	0.01	coding (1354/1404 nt)	RCAP_rcc00351	sensor histidine kinase
*	?	NC_014034	388767 =	197 (0.930)	2 (0.010)	2/180	31.1	0.01	coding (719/1173 nt)	macA	macrolide export ABC transporter macrolide‑specific efflux protein MacA
Rejected: Position hash score below cutoff.

Only 100 of 181 total aligned reads displayed.


CGGCACCGGGCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGGAAAGAAATCTTTC  >  NC_014034/378743‑378943


ggacACCGGGCTGGCTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGcc                                                                                                       <  2:3439945/98‑1 (MQ=255)


cggcACCGGGCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGGGGCTGGAGCTGGAGCGCAGCGAGGAGAGCGGCACCGCAATTCGcc                                                                                                       >  2:1997684/1‑101 (MQ=255)


  gcACCGGGCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGGGGCTGGGGCCGGAGGGCAGCGACGGGGCCGGGCCCGCAATCCGCCtc                                                                                                     >  2:1532491/1‑100 (MQ=255)


   cACCGGGCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGGTCGGGGGGGGGCGCGGCGGCGGGCCCGGCAACGCATTACGccctc                                                                                                    >  2:3078614/1‑98 (MQ=255)


     ccGGGCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCAc                                                                                                  <  2:4125642/101‑1 (MQ=255)


     ccGGGCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCAc                                                                                                  <  2:4051823/101‑1 (MQ=255)


      cGGGCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCAcc                                                                                                 <  1:3064333/101‑1 (MQ=255)


       gggCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGGGGCTGGAGCTGGGGGGCAGCGACGAGACCGGGACCGAACTCCGCCCCCAccc                                                                                                >  2:1349453/1‑100 (MQ=255)


         gCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGGCGGAGGTGCGGCGGAGAGACGGCAGCGCCAGCCAAATCCGCCCGCAccccc                                                                                              >  2:646689/1‑98 (MQ=255)


          gtGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGcc                                                                                             <  2:1080467/100‑1 (MQ=255)


          cTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGcc                                                                                             <  1:1873255/101‑1 (MQ=255)


           tGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGGGGGTGGGGCGGGGGCGCAGCGACGAGAACGGCACCGAAATCCCCCCGCCccccccc                                                                                            >  2:2582730/1‑96 (MQ=255)


           tGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGGGGGGGGGGGTGGGGCGCAGGGGAGAGACCGGCCCCGCAATTCGCCCGCCccacccc                                                                                            >  2:369750/1‑96 (MQ=255)


             ggTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGGGGCCGGGGGGGGGGGGGAGCGGCGGGGCGGGCGCCGCATTTCCCCCGCCCCCGCcgcg                                                                                          >  1:2794700/1‑101 (MQ=255)


              gTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGGGGCTCGGGGCGGGGGGGAGCGGCGAGACCGGCACCGAAATCCGCCTGCCCCCGCcgccg                                                                                         >  2:3251838/1‑99 (MQ=255)


               tCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGc                                                                                        <  1:498214/101‑1 (MQ=255)


                cTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGGGGGGGGGGGTGGGGGGCCGCGACGGGACCGGGACCGCATTTCCCCTGCCCCTTCCCCCGcc                                                                                       >  1:2050646/1‑101 (MQ=255)


                 tGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCg                                                                                      <  1:3822783/101‑1 (MQ=255)


                    cGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCgctg                                                                                   <  1:870446/101‑1 (MQ=255)


                            gcggAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGGGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTggc                                                                           <  2:42059/101‑1 (MQ=255)


                            gcggAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTggc                                                                           <  1:1853132/101‑1 (MQ=255)


                             gggAACTGGTGCGCGGTCGCGGGGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCCCCTGCCGCGGCCGCTGCTGCTggcg                                                                          <  2:3342724/100‑1 (MQ=255)


                             cggAACTGGTGCGCGGTCACGGCGGGCGGCTGGGGCTGGGGGGCCGCGACGAGACCGGCACCGAACTCCCCCTGCACCCCCCGCGGCCGCCGCTGCTggcg                                                                          >  2:2541523/1‑101 (MQ=255)


                              ggAACTGGTGCGCGGTCACGGCGGGGGGCTGGGGGTGGGGGGGAGCGACGAGACCCGCACCGCATTCCGCCCGCCCCTGCCGCGGCCGCCGCTGCTggcgg                                                                         >  1:729787/1‑101 (MQ=255)


                                aaCTGGTGCGCGGTCACGGCGGGGGGCTGGGGGTGGGGGGGAGCGGCGAGACCGGCACCCAATTTCGCCCGCACCTGCCGCGGCCGCCGCTGCTggcgggg                                                                       >  2:4114931/1‑100 (MQ=255)


                                 gcTGGTGCGCGGTCACGGCGGGGGGCTGGAGCTGGGGGGGCGCGGCCGGACCGGCACCGAATTCCGCCCGCCCCCGCCGCGGGCGCCGCCGCCggcggggc                                                                      >  2:1443263/2‑99 (MQ=255)


                                 aCTGGTGCGCGGTCACGGCGGGGGGCTGGGGCTGGGGCGCAGCGACGAGACCGGCACCGAATTCCGCCCGCACCTGCCGCGGCCGCTGCTGCTggcgggcg                                                                      >  2:31371/1‑101 (MQ=255)


                                  cTGGTGCGCGGTCACGGCGGGCGGCTGGGGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCACGGCCGCTGCTGCTGGCGGGcga                                                                     <  1:782996/101‑1 (MQ=255)


                                   tGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGAGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGcgac                                                                    <  1:1009439/101‑1 (MQ=255)


                                    ggTGCGCGGTCAGGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGcgac.g                                                                  <  1:116079/101‑1 (MQ=255)


                                    ggTGCGCGGTCACGGCGGGCGGCTGGGGCTGGAGCGCAGCGACGCGACCCGCACCGAATTCCGCCCGCACCTGCCGCCGCCCCCGCTGCTggcggggggcg                                                                   >  2:1487732/1‑96 (MQ=255)


                                      ggcgcGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAg                                                                <  1:266158/100‑1 (MQ=255)


                                        cccgGTCACGGCGGGCGGCTGGAGCTGGAGCGCGGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGc                                                              <  2:1261476/99‑1 (MQ=255)


                                          cgGTCACGGCGGGCGGCTGGAGCTGGGGGGCAGCGACGAGACCGGGACCGAATTCCGCCCGCCCCTGCCGCGGCCGCTGCTGCTGGGGGGCGGCGGAGGcc                                                             >  2:1142475/1‑101 (MQ=255)


                                           ggTCACGGCGGGCGGCTGGAGCTGGGGCGCAGCGACGAGACCGGCCCCGAATTCCGCCTGCCCCTGCCGCGGCCGCTGCTGCTGGCGGGGGGC.GGGGGcgc                                                           >  1:1602153/1‑101 (MQ=255)


                                                gggggggcggATGGAGCTGGAGCGAGGCGCCGAGACCGGCACCGAATCCCCCCTGCCCCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCt                                                      <  1:417509/97‑1 (MQ=255)


                                                cggcggGCGGCGGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCt                                                      <  2:2813719/101‑1 (MQ=255)


                                                 ggcgggcgGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGGCTg                                                     >  2:2920837/1‑101 (MQ=255)


                                                   cgggcggCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGGCGCGGTCCGaa                                                   >  2:938330/1‑101 (MQ=255)


                                                   cgggcggCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGaa                                                   >  1:2198077/1‑101 (MQ=255)


                                                    gggcggCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAAc                                                  >  1:2147774/1‑101 (MQ=255)


                                                    gggcgcCGGGAGCTGGAGCGCAGCAACGAGACCGGCACGGAATGCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAAc                                                  <  2:3997664/101‑1 (MQ=255)


                                                       cggcTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGGCTGAACGAt                                               >  2:1916902/1‑101 (MQ=255)


                                                       cggcTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGGCTGAACGAt                                               >  2:879058/1‑101 (MQ=255)


                                                        ggcTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGGCTGAACGATg                                              >  1:2311075/1‑101 (MQ=255)


                                                         gctggagctggaGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGc                                             >  1:2993844/1‑101 (MQ=255)


                                                         gctggagctggaGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGc                                             >  1:1339010/1‑101 (MQ=255)


                                                           tggagctggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGccc                                           >  1:1539299/1‑101 (MQ=255)


                                                            ggagctggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGcccc                                          <  2:2849379/101‑1 (MQ=255)


                                                            ggagctggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGcccc                                          >  1:3283737/1‑101 (MQ=255)


                                                            ggagctggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGcccc                                          <  2:1850801/101‑1 (MQ=255)


                                                             gagctggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCg                                         >  2:617355/1‑101 (MQ=255)


                                                             gagctggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCg                                         <  2:3746800/101‑1 (MQ=255)


                                                              agctggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGGCTGAACGATGCCCCGa                                        >  1:2469813/1‑101 (MQ=255)


                                                                ctggagcGCAGCGACGAGCCCGCCACCGAATTCCGCCTGCCCCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGaaa                                      <  1:1544549/101‑1 (MQ=255)


                                                                ctggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCTAC.GAGGCCGCGGTCTGAACGATGCCCCGaaa                                      <  1:3791930/101‑1 (MQ=255)


                                                                 tggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAAt                                     <  2:2260590/101‑1 (MQ=255)


                                                                  ggagcGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATc                                    <  1:4115192/101‑1 (MQ=255)


                                                                      cgcAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGa                                >  1:4153708/1‑101 (MQ=255)


                                                                       gcAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGAc                               >  2:2622617/1‑101 (MQ=255)


                                                                       gcAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGAc                               <  1:955885/101‑1 (MQ=255)


                                                                       gcAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGAc                               >  1:304183/1‑101 (MQ=255)


                                                                        cAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACg                              <  1:2582921/101‑1 (MQ=255)


                                                                        atctgacgaGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACg                              <  2:2752203/97‑1 (MQ=255)


                                                                         aGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGGCGCGGTCTGAACGATGCCCCGAAATCCGGACGa                             >  1:3627186/1‑101 (MQ=255)


                                                                         aGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGGCTGCACGATGCCCCGAAATCCGGACGa                             >  1:1217635/1‑101 (MQ=255)


                                                                          gCGACGAGACCGGCCCCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGaa                            <  2:547203/101‑1 (MQ=255)


                                                                           cgccgaGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGaaa                           <  2:3188651/98‑1 (MQ=255)


                                                                            gccggggccGGCGCCGAATTCCCCCGCCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAAt                          <  1:936221/94‑1 (MQ=255)


                                                                            gacgaGACCGGCCCCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAAt                          <  2:616887/101‑1 (MQ=255)


                                                                            gacgaGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAGAt                          >  1:2752422/1‑101 (MQ=255)


                                                                            gacgaGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAAt                          >  2:994086/1‑101 (MQ=255)


                                                                             acgaGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCAAAATCCGGACGAAATc                         <  2:1602044/101‑1 (MQ=255)


                                                                              cgaGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGGCTGAACGATGCCCCGAAATCCGGACGAAATcc                        >  1:3138032/1‑101 (MQ=255)


                                                                               gagaCCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCg                       <  2:487916/101‑1 (MQ=255)


                                                                                agaCCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAACTCCgg                      >  2:3515808/1‑101 (MQ=255)


                                                                                agaCCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCgg                      >  1:1062827/1‑101 (MQ=255)


                                                                                agaCCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTATGAACGATGCCCCGAAATCCGGACGAAATCCgg                      >  1:3644260/1‑101 (MQ=255)


                                                                                  aCCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCgggg                    >  1:2440381/1‑101 (MQ=255)


                                                                                      gCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGACATCCGGACGAAATCCgggggggg                >  2:4078770/1‑99 (MQ=255)


                                                                                       ccccGAATCCCGCCTGCCCCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCgg               <  1:3956820/99‑1 (MQ=255)


                                                                                       cACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCgg               <  2:195253/101‑1 (MQ=255)


                                                                                       cACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCgg               <  1:1917028/101‑1 (MQ=255)


                                                                                        ccggAATTCCGCGCGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGga              <  2:1152003/98‑1 (MQ=255)


                                                                                        ccgaaaTCCCGCCGGCCCCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGga              <  2:1169268/97‑1 (MQ=255)


                                                                                        cccGAATTCCGCCTGCCCCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGga              <  1:1997810/100‑1 (MQ=255)


                                                                                        aCCGAATCCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGga              <  1:4227319/101‑1 (MQ=255)


                                                                                        aCCGAATCCCCCCTGCCCCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGga              <  2:1646752/101‑1 (MQ=255)


                                                                                          ggAATTCCGCCTGCACCTGTGGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATACCGCGAAATCCGTACGAAAACCGGGGGGCGgaaa            <  1:2408869/100‑1 (MQ=255)


                                                                                          cGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGgaaa            >  2:2776850/1‑101 (MQ=255)


                                                                                           gAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGgaaag           >  2:4085377/1‑101 (MQ=255)


                                                                                            aaTTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCCAAATCCGGACGAAATCCGGGGGGCGgaaaga          >  2:3851847/1‑101 (MQ=255)


                                                                                             agtCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGgaaagaa         <  1:994177/99‑1 (MQ=255)


                                                                                              ttCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGggaaaaaa        >  2:2164339/1‑101 (MQ=255)


                                                                                              ttCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGgaaagaaa        <  2:230648/101‑1 (MQ=255)


                                                                                              tcccGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGgaaagaaa        <  2:2236728/99‑1 (MQ=255)


                                                                                                 ccccTGCCCCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGGAAAGAAATCt     <  1:897291/99‑1 (MQ=255)


                                                                                                   ccTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGGAAAGAAATCttt   >  2:1844417/1‑101 (MQ=255)


                                                                                                    cTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGGAAAGAAATCTTTc  >  2:2443611/1‑101 (MQ=255)


                                                                                                    cTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGGAAAGAAATCTTTc  <  2:2469629/101‑1 (MQ=255)


CGGCACCGGGCTGGGTCTGGCGATTTCGGCGGAACTGGTGCGCGGTCACGGCGGGCGGCTGGAGCTGGAGCGCAGCGACGAGACCGGCACCGAATTCCGCCTGCACCTGCCGCGGCCGCTGCTGCTGGCGGGCGAC.GAGGCCGCGGTCTGAACGATGCCCCGAAATCCGGACGAAATCCGGGGGGCGGAAAGAAATCTTTC  >  NC_014034/378743‑378943

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 24 ≤


ATCG

< 33 ≤


ATCG

< 41 ≤


ATCG