New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193631	14 (0.060)	19 (0.080)	13/192	27.9	0.46	intergenic (+96/‑155)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 1732863	30 (0.130)					intergenic (‑287/‑116)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

GGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGG..................................................................................................  >  NC_014034/1193529‑1193631 ....................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAG  <  NC_014034/1732863‑1732766                                                                                                                                                                                                                GAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGG                                                                                                 <  1:712576/101‑1 (MQ=1)        GCCGGTTGCAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                               <  2:3968196/101‑1 (MQ=0)         CCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGggc                                                                                              >  1:3980567/1‑98 (MQ=1)         CCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTc                                                                                              <  2:2480362/101‑2 (MQ=11)             TTTCAAAAGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTccgcc                                                                                          <  1:2872118/101‑6 (MQ=17)               TCAAAAGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCC                                                                                        <  1:1937795/101‑1 (MQ=17)               TCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTGCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCC                                                                                        <  2:4648322/101‑1 (MQ=17)                      ATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACC                                                                                 <  2:2997864/101‑1 (MQ=32)                                                                ggaagcTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGGATTTTGCCTAGGAAAAGCGGG                                       >  1:2819242/7‑101 (MQ=255)                                                                      TTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTT                                 >  2:625536/1‑101 (MQ=33)                                                                        TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGC                               >  1:3828337/1‑101 (MQ=32)                                                                             TCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGCAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTT                          >  1:3070274/1‑101 (MQ=17)                                                                                ctCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGAC                       <  1:3661897/99‑1 (MQ=17)                                                                                  CAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGC                     >  2:2697891/1‑101 (MQ=32)                                                                                    AGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCCCCCCCCCCAAAAGAAAGAAGGGCGGATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGG                   >  1:4228907/1‑101 (MQ=2)                                                                                            GCGCCCCGCGGGGGGCTTCCCCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATG           <  2:1663018/101‑1 (MQ=0)                                                                                             cgcCCCGCGGGGGGCTCCA.CCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCG         <  2:1249094/98‑1 (MQ=0)                                                                                               ACCCGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGG        >  1:788266/1‑101 (MQ=1)                                                                                                  CGCGGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGTCCCTTGCCTGTTGACGCGGACGGCATGCGGCTG     <  2:3573503/101‑1 (MQ=1)                                                                                                                                                                                                           GGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGG..................................................................................................  >  NC_014034/1193529‑1193631 ....................................................................................................GGGGGGCTTCACCCCCCGCCCCCCCGAAAAGAAAGAAGGGCGTATTTTGCCTAGGAAAAGCGGGGCCCTTGCCTGTTGACGCGGACGGCATGCGGCTGCAG  <  NC_014034/1732863‑1732766 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 39 ≤  ATCG