New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193631	14 (0.060)	19 (0.080)	13/192	27.9	0.46	intergenic (+96/‑155)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 1732863	30 (0.130)					intergenic (‑287/‑116)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

GAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGC  >  NC_014034/1193534‑1193729                                                                                                       |                                                                                                   gAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                                                                 <  1:712576/101‑4 (MQ=255)   gCCGGTTGCAAAAGATCGCGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                                                               <  2:3968196/101‑6 (MQ=255)    ccGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggggc                                                                                              >  1:3980567/1‑95 (MQ=255)    ccGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctc                                                                                              <  2:2480362/101‑7 (MQ=255)     cGGTTTCAAAAGATCAGGGGGAAGGGGG.CTT.GGGCCCCTTTTTTAATGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                             <  1:1385114/101‑8 (MQ=25)     cGGTTAAAAAAGATCAGGGGGAGGGGGG.CTT.CGCCCCCTTTTTTCATGGGTTGCAGGATTTTTCGCCTGGGGCAACCCCGAGGCGACCCGC...ggggggctcc                                                                                             <  1:1577071/101‑8 (MQ=21)        tttCAAAAGATCAGGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctccgcc                                                                                          <  1:2872118/101‑11 (MQ=37)                 aTCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                                                                    <  2:2997864/101‑1 (MQ=21)                   cagggggAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                                                                  <  2:2264610/98‑1 (MQ=21)                   cACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGGGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                                                                  <  2:3018585/101‑1 (MQ=21)                     gggggAAAGGGC.CTTGCGCCCCCCTTTTCCCTGCGTTCGAGGATATTCCCCCCGGGGCAGCCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCAccccc                                                                                 <  1:2351965/100‑1 (MQ=2)                      ggggAGGGGGG.CTG.CGGCCCCCTTTTTCGTGCGTTGCAGGATATTTCGCCTCGGGCAGGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCg                                                                               <  1:2098958/101‑1 (MQ=17)                        ggAAGGGGGCCTT.CGCCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCCCGGGCAGGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCgg                                                                              <  2:2124239/101‑1 (MQ=14)                                            cttttttCTTGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaaaa                                                           <  2:4616665/99‑1 (MQ=11)                                              tttttCATGGTTTGCAGGATTTTCCGCCTGGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAgc                                                         <  1:931851/101‑1 (MQ=11)                                                   ctgggtttGCAGGATTTTCCGCCGCGGCCAGCCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAg                                                    <  2:3202646/95‑1 (MQ=11)                                                          tgaaGGATTTTTCGCCTGGGGCAGGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGa                                             <  2:3733984/98‑1 (MQ=11)                                                                  tttgccccgcGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTcgc                                     <  1:4159713/92‑1 (MQ=14)                                                                                            ccccgcggggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCtt           <  1:643026/92‑1 (MQ=255)                                                                                                   gggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCaaaa    <  1:1763948/99‑1 (MQ=255)                                                                                                    ggggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGGCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAg   >  1:4282247/2‑101 (MQ=255)                                                                                                     gggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGc  >  2:3977688/1‑101 (MQ=255)                                                                                                       |                                                                                                   GAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGC  >  NC_014034/1193534‑1193729 Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 39 ≤  ATCG