New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1473412 =	158 (0.820)	7 (0.040)	2/158	34.2	0.05	intergenic (+119/+100)	nadE/RCAP_rcc01367	NAD(+) synthase (glutamine‑hydrolyzing)/hypothetical protein
	?	NC_014034	2945121 =	127 (0.530)					intergenic (+98/+346)	RCAP_rcc02755/RCAP_rcc02756	metallo‑beta‑lactamase/hypothetical protein
Rejected: Position hash score below cutoff.

GCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCGC...................................................................................................  <  NC_014034/1473530‑1473412 .....................................................................................................CGGCCAGCGCCCGCCCCGCCCCTGGCGGGCGCTTCTCGCCCGCCGGGCCGGGCGCCGGCCTCTGTTGTGCCTCGCGGAAACGGTCCTGCACGCCCCCTGGCGCTGCCGGGCGGGGAAA  >  NC_014034/2945121‑2945219                                                                                                                                                                                                                                                 CCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCGCCC                                                                                                   <  1:640399/101‑1 (MQ=1)                     CCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCCCCC                                                                                                   >  1:1293569/1‑101 (MQ=1)                        CTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCGCCCCcg                                                                                                >  1:3625087/1‑99 (MQ=11)                        CTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCCCCCCcc                                                                                                >  1:3592976/1‑99 (MQ=11)                           CCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCCCCCCGCCCCCGGCG                                                                                             >  1:2566967/1‑101 (MQ=0)                             CTTGTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCGCCCCCGGCGGG                                                                                           >  1:3590111/1‑101 (MQ=0)                                 TTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCCCCCCCGGCGGGggag                                                                                       >  1:2912991/1‑97 (MQ=0)                                  TGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCGCCCCCGGCGGGGGCcg                                                                                      >  2:1462317/1‑99 (MQ=0)                                                                                     GGGGCCCAAAGGCGCCCCGGCCAGCGCCCGCCCCGCCCCTGGCGGGCGCTTCTCGCCCGCCGGGCCGGGCGCCGGCCTCTGTTGTGCCTCGCGGAAACGGT                                    <  2:1678042/101‑1 (MQ=255)                                                                                                                                                                                                                             GCGGCGGTTGGGGGTCTAGGCCCCTGCCCTTTTTGACCGAGGCCATCGCCGAGGTCATGCGCGACATTTGCCCCGTGACCGCCGGGGGCCCAAAGGC.CCTCGGCCAGCGCCCGCCCCGC...................................................................................................  <  NC_014034/1473530‑1473412 .....................................................................................................CGGCCAGCGCCCGCCCCGCCCCTGGCGGGCGCTTCTCGCCCGCCGGGCCGGGCGCCGGCCTCTGTTGTGCCTCGCGGAAACGGTCCTGCACGCCCCCTGGCGCTGCCGGGCGGGGAAA  >  NC_014034/2945121‑2945219 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG