New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1542725 =	228 (0.970)	2 (0.010)	2/198	38.6	0.01	coding (415/1002 nt)	RCAP_rcc01431	AraC family transcriptional regulator
	?	NC_014034	3096942 =	225 (0.950)					coding (995/1095 nt)	RCAP_rcc02897	sensor histidine kinase
Rejected: Position hash score below cutoff.

TGCGAACCGATGGGGCAGCGCTATCGCATGG....................................................................................................  <  NC_014034/1542755‑1542725 ..............................GGCGAGGCGCTGATCCTGCCCGACAGCCCCGGGCTGACGGTGGAAATCCGTCTGCCCTGCCGCAAAGTTTCCCTTTCGGAGCAAGACTTTGATGACCAATG  >  NC_014034/3096942‑3097041                                                                                                                                     TGCGAACCGATGGGGCAGCGCTATCGCAT.GGCGAGGCGCTGATCCTGCCCGACAGCCCCGGGCTGACGGTGGAAATCCGTCTGCCCTGCCGCAAAGTTTCC                               >  2:673336/1‑101 (MQ=255)      ACCGATGGGGCAGCGCTATCGCAT.GGCGAGGCGCTGATCCTGCCCGACAGCCCCGGGCTGACGGTGGAAATCCGTCTGCCCTGCCGCAAAGTTTCCCTTTC                          <  1:673398/101‑1 (MQ=255)                                                                                                                                     TGCGAACCGATGGGGCAGCGCTATCGCATGG....................................................................................................  <  NC_014034/1542755‑1542725 ..............................GGCGAGGCGCTGATCCTGCCCGACAGCCCCGGGCTGACGGTGGAAATCCGTCTGCCCTGCCGCAAAGTTTCCCTTTCGGAGCAAGACTTTGATGACCAATG  >  NC_014034/3096942‑3097041 Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 28 ≤  ATCG  < 38 ≤  ATCG