New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1543243	208 (0.960)	2 (0.010)	2/182	36.9	0.01	intergenic (‑104/‑349)	RCAP_rcc01431/RCAP_rcc01432	AraC family transcriptional regulator/AraC family transcriptional regulator
	?	NC_014034	1963454 =	243 (1.020)					coding (742/1824 nt)	RCAP_rcc01816	family 5 extracellular solute‑binding protein
Rejected: Position hash score below cutoff.

TCATCTGGATCTCCGGAACCGGGCAGAAGGCTAATGTGACAAAAATAGTCAACAAAAGACAGCCCGTCTTCTGCGCCGCGGTCCCTGCGTCCAGATGCCGCCCGCGGG....................................................................................................  >  NC_014034/1543136‑1543243 ...................................................................................................GCCCGCGGGTGATCGGCAGATCCTTGCCCCACCAGTCGGGATTGCGCCGCAATGTGATCGACCGGCCCATGTCGACCTTATCCACGACATAGGGCCCGGAGCCCACCGG  >  NC_014034/1963454‑1963553                                                                                                                                                                                                                                                       GACAAAAATAGTCAACAAAAGACAGCCCGTCTTCTGCGCCGCGGTCCCTGCGTCCAGATGCCGCCCGCGGGTGAACGGCAGATCCTTGCCCCACCAGTCGG                                                                        >  1:3918803/1‑101 (MQ=255)                                                     CAAAAGACAGCCCGTCTTCTGCGCCGCGGTCCCTGCGTCCAGATGCCGCCCGCGGGTGATCGGCAGATCCTTGCCCCACCAGTCGGGATTGCGCCGCAATG                                                         <  2:3918518/101‑1 (MQ=255)                                                                                                                                                                                                                  TCATCTGGATCTCCGGAACCGGGCAGAAGGCTAATGTGACAAAAATAGTCAACAAAAGACAGCCCGTCTTCTGCGCCGCGGTCCCTGCGTCCAGATGCCGCCCGCGGG....................................................................................................  >  NC_014034/1543136‑1543243 ...................................................................................................GCCCGCGGGTGATCGGCAGATCCTTGCCCCACCAGTCGGGATTGCGCCGCAATGTGATCGACCGGCCCATGTCGACCTTATCCACGACATAGGGCCCGGAGCCCACCGG  >  NC_014034/1963454‑1963553 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG