New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 158245	72 (0.310)	21 (0.090)	9/198	31.5	0.28	intergenic (+48/‑182)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	= 2330289	35 (0.150)					intergenic (+264/+48)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCG....................................................................................................  >  NC_014034/158145‑158245 ....................................................................................................GGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCG  <  NC_014034/2330289‑2330190                                                                                                                                                                                                                                                                                       cgccccgcCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGG                          <  2:3933691/93‑1 (MQ=17)                                                                                cccgcCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTT                       <  2:3612832/96‑1 (MQ=32)                                                                                 ccgcCGGGGTCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTT                      <  2:1589691/97‑1 (MQ=17)                                                                                 ccgcCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTT                      <  2:1757145/97‑1 (MQ=32)                                                                                  cgcCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTT                     <  2:630265/98‑1 (MQ=32)                                                                                  cgcCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTT                     <  2:2909406/98‑1 (MQ=32)                                                                                  cgcCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTT                     <  1:3300333/98‑1 (MQ=32)                                                                                  cgcCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTT                     <  1:1905623/98‑1 (MQ=32)                                                                                   gcCGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTT                    <  1:3900184/99‑1 (MQ=31)                                                                                     CGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCT                  >  1:418368/1‑101 (MQ=1)                                                                                     CGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCT                  >  1:2486964/1‑101 (MQ=1)                                                                                     CGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCT                  >  1:2426598/1‑101 (MQ=1)                                                                                     CGGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCCCCCCGGCTTTTTCT                  >  1:2731295/1‑101 (MQ=1)                                                                                      GGGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCTCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTT                 >  1:4136423/1‑101 (MQ=1)                                                                                       GGGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTG                <  2:3976145/101‑1 (MQ=1)                                                                                        GGGCTCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGG               <  1:2137467/101‑1 (MQ=1)                                                                                            TCCGCCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCNNNNNGNGCGCCCCNGCNTTTTCTTGGCGCA           >  1:590716/1‑101 (MQ=0)                                                                                                CCCCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATA       <  2:2523131/101‑1 (MQ=1)                                                                                                  CCCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACG     >  1:311487/1‑101 (MQ=1)                                                                                                   CCGGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGC    >  1:775002/1‑101 (MQ=1)                                                                                                    CGGACCCCCGGGATCTTTGGCCCCAGTTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCC   <  1:2799402/101‑1 (MQ=1)                                                                                                                                                                                                           GCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCG....................................................................................................  >  NC_014034/158145‑158245 ....................................................................................................GGACCCCCGGGATCTTTGGCCCCAGGTGAAAGCCGCCCGGGCCGCCGGTGATCCGGGGCCCCGCATGCGCGCCCCGGCTTTTTCTTGGCGCAAATACGCCG  <  NC_014034/2330289‑2330190 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG