New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 158245	72 (0.310)	21 (0.090)	9/198	31.5	0.28	intergenic (+48/‑182)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	= 2330289	35 (0.150)					intergenic (+264/+48)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGCGGGC  >  NC_014034/158145‑158345                                                                                                     |                                                                                                     gcgcCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCg                                                                                                      <  2:2485604/101‑1 (MQ=255)    ccGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAc                                                                                                   <  2:4197749/101‑1 (MQ=255)       ggCGGATGGCGCCGCGGGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCCCGGGGGCTCCGCCCCCGCAcccc                                                                                                <  1:2851723/101‑1 (MQ=255)        gCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                                               <  2:3247259/101‑1 (MQ=255)        gCGGATGGCGCCGCGCGGTTTCCCGCGCAAGACCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccccc                                                                                               <  1:120491/101‑1 (MQ=255)          ggATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCgg                                                                                             <  1:1700025/101‑1 (MQ=255)            aTGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCg                                                                                           <  1:893014/101‑1 (MQ=255)              ggCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTa                                                                                         <  2:660108/101‑1 (MQ=255)                 gccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAttt                                                                                      <  1:1281937/101‑1 (MQ=255)                 gccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAttt                                                                                      <  1:2949860/101‑1 (MQ=255)                       cgGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCaa                                                                                <  1:1128108/101‑1 (MQ=255)                       cgGTTGCCCGCGCGACAACCGGGTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCaa                                                                                <  2:799993/101‑1 (MQ=255)                        ggTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAg                                                                               <  1:293362/101‑1 (MQ=255)                            tCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaa                                                                           <  1:3903266/101‑1 (MQ=255)                            tCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaa                                                                           <  1:1619007/101‑1 (MQ=255)                             cccGCGCGACAACCGGGTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaaa                                                                          <  2:1169000/101‑1 (MQ=255)                                   cgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAgg                                                                    <  2:3027095/101‑1 (MQ=255)                                      cAACCGGTTCCCCTGACGGGGTNTCGNGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGc                                                                 <  1:4163224/101‑1 (MQ=255)                                       aaCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGca                                                                <  2:4657794/101‑2 (MQ=255)                                        aCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                                               <  1:1840385/101‑1 (MQ=255)                                        aCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                                               <  1:550975/101‑1 (MQ=255)                                            gTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCg                                                           <  2:2094862/101‑1 (MQ=255)                                             ttCCCCTGACGGGGTTTCGGGCTGTGCCGCGACCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCgg                                                          <  1:4146215/101‑1 (MQ=255)                                               ccccTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGAc                                                        <  2:983427/101‑1 (MQ=255)                                                  cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                                                     <  1:3306497/101‑1 (MQ=255)                                                  cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                                                     <  2:4212519/101‑1 (MQ=255)                                                    gACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTc                                                   <  2:4564513/101‑1 (MQ=255)                                                    gACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTc                                                   <  1:590811/101‑1 (MQ=255)                                                     gcGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCg                                                  <  1:2048120/100‑1 (MQ=255)                                                     gcGGGGGTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCg                                                  <  2:3687782/100‑1 (MQ=255)                                                        gggTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGttt                                               <  1:3607299/101‑1 (MQ=255)                                                          gTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCg                                             <  2:2021784/101‑1 (MQ=255)                                                              cGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGa                                         <  2:1597340/101‑1 (MQ=255)                                                               gggCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAc                                        <  2:4400186/101‑1 (MQ=255)                                                                      gCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCt                                 <  2:1146514/101‑1 (MQ=255)                                                                         gcgcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGcc                              <  1:2057366/101‑1 (MQ=255)                                                                         gcgcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGcc                              <  2:181649/101‑1 (MQ=255)                                                                           gcCCGGCCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCt                            <  1:630731/101‑1 (MQ=255)                                                                           gcCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCt                            <  1:1983597/101‑1 (MQ=255)                                                                            cccGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTg                           <  1:2666837/101‑1 (MQ=255)                                                                             ccGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGATGTGTCGTTTCGGGGACGCGCGCTGCCCTgg                          <  1:4148353/101‑1 (MQ=255)                                                                                gcccGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAg                       <  2:103294/100‑1 (MQ=255)                                                                                      gggggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCACTGCCCTGGCAGGCGGcc                 >  1:2233593/1‑101 (MQ=255)                                                                                       ggggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAACGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCt                <  1:3246628/101‑1 (MQ=255)                                                                                       ggggCTCCGCCCCCGCACCCCCGGCGAATTTTGCCAAGGAAAAGCAAGGGGCCCCCCGAACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCt                >  2:1825913/1‑101 (MQ=255)                                                                                        gggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCtt               >  2:2708847/1‑101 (MQ=255)                                                                                        gggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCtt               <  1:672074/101‑1 (MQ=255)                                                                                        gggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCATGGCAGGCGGCCtt               <  1:248564/101‑1 (MQ=255)                                                                                         ggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTg              <  1:568313/101‑1 (MQ=255)                                                                                         ggCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTg              <  2:1519701/101‑1 (MQ=255)                                                                                          tccgatctcccGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTgc             <  2:296622/93‑1 (MQ=255)                                                                                           cTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTggg            >  2:2338128/1‑99 (MQ=255)                                                                                           cTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTgcg            >  2:334391/1‑101 (MQ=255)                                                                                           cTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTgcg            >  2:3112080/1‑101 (MQ=255)                                                                                            tCCGCCCCCGCACCCCCGGCGTATTTTGCCCAGGAAAAGAAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTgcgg           >  2:3164180/1‑100 (MQ=255)                                                                                            tCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTgcgc           >  1:2137753/1‑101 (MQ=255)                                                                                             ccGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGcgcg          >  1:3084055/1‑101 (MQ=255)                                                                                             ccGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGcgcg          >  1:4641201/1‑101 (MQ=255)                                                                                             ccGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGcgcg          >  2:3354029/1‑101 (MQ=255)                                                                                              cGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGa         <  2:1538910/101‑1 (MQ=255)                                                                                              cGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGa         >  2:1148306/1‑101 (MQ=255)                                                                                              cGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACCCGCGCTGCCCTGGCAGGCGGCCTTGCGCGa         >  1:2242007/1‑101 (MQ=255)                                                                                               gCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTTCGCGaa        >  2:4470691/1‑101 (MQ=255)                                                                                               gCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGaa        <  2:373028/101‑1 (MQ=255)                                                                                                 ccccGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGc      >  2:1693071/1‑101 (MQ=255)                                                                                                 ccccGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGc      <  2:2568766/101‑1 (MQ=255)                                                                                                  cccGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGGGGCCTTGCGCGACGCg     >  2:3590753/1‑101 (MQ=255)                                                                                                  cccGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTgcagatcgga     >  1:296654/1‑93 (MQ=255)                                                                                                   ccGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGCgg    >  1:4220239/1‑101 (MQ=255)                                                                                                   ccGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGCgg    >  2:3143254/1‑101 (MQ=255)                                                                                                    cGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGCggg   >  1:1593885/1‑101 (MQ=255)                                                                                                     gCACTCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGCGGGc  <  2:2074442/101‑1 (MQ=255)                                                                                                     gCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGCGGGc  >  2:2133826/1‑101 (MQ=255)                                                                                                     |                                                                                                     GCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGGCAGGCGGCCTTGCGCGAAGCGGGC  >  NC_014034/158145‑158345 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG