New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1988023	219 (0.990)	2 (0.010)	2/186	37.3	0.01	coding (1087/1434 nt)	glgA	glycogen synthase
	?	NC_014034	= 3661533	241 (1.010)					coding (384/2232 nt)	RCAP_rcc03452	sensor histidine kinase/response regulator receiver protein
Rejected: Position hash score below cutoff.

CCGCCGACCGCGGAAACAAGGGGCAGGCAGCCGTAACGCAACCCATAAAGCTGGGTCAGACCGCAGGGCTCGAAGCGCGAGGGCACAAGCACCGCATCTGCGCCCGC....................................................................................................  >  NC_014034/1987917‑1988023 ....................................................................................................CGCCCGCGGTGATCGCCACCTCGCCATGAAAGAAGGACAGATAGGCCCGGTTCGCCACCACCAGCCGCAGATCGCCATCATAGACCGCAAAGCCGTCGCGGATGGTT  <  NC_014034/3661533‑3661434                                                                                                                                                                                                                                            gatctGTAACGCAACCCATAAAGCTGGGTCAGACCGCAGGGCTCGAAGCGCGAGGGCACAAGCACCGCATCTGCGCCCGCGGTGATCGCCACCTCGCCATG                                                                                 <  2:3559860/96‑1 (MQ=255)                                 GTAACGCAACCCATAAAGCTGGGTCAGACCGCAGGGCTCGAAGCGCGAGGGCACAAGCACCGCATCTGCGCCCGCGGTGATCGCCACCTCGCCATGAgatc                                                                            >  1:3560118/1‑97 (MQ=255)                                                                                                                                                                                                                 CCGCCGACCGCGGAAACAAGGGGCAGGCAGCCGTAACGCAACCCATAAAGCTGGGTCAGACCGCAGGGCTCGAAGCGCGAGGGCACAAGCACCGCATCTGCGCCCGC....................................................................................................  >  NC_014034/1987917‑1988023 ....................................................................................................CGCCCGCGGTGATCGCCACCTCGCCATGAAAGAAGGACAGATAGGCCCGGTTCGCCACCACCAGCCGCAGATCGCCATCATAGACCGCAAAGCCGTCGCGGATGGTT  <  NC_014034/3661533‑3661434 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 31 ≤  ATCG  < 38 ≤  ATCG