New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221962 =484 (2.430)10 (0.050) 3/168 34.1 0.03 coding (695/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222125 205 (0.860)coding (532/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC...............................................................................  <  NC_014034/222061‑221962
....................................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCT  <  NC_014034/222125‑222063
                                                                                                    ||||||||||||||||                                                               
CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACG                                                                                >  1:3606848/1‑101 (MQ=14)
 GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGCTCCGACGG                                                                               >  2:583566/1‑101 (MQ=11)
 GGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGACCCCACGGATCCGACGG                                                                               >  1:2051975/1‑101 (MQ=11)
  GACCCGCCCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGA                                                                              <  1:3244658/101‑1 (MQ=0)
     CCGACCGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCC                                                                           <  1:2592887/101‑1 (MQ=12)
      ctACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                          <  2:106042/99‑2 (MQ=9)
      CGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCc                                                                          <  1:14901/101‑2 (MQ=14)
       GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca                                                                         >  2:558880/1‑99 (MQ=11)
       GACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCca                                                                         <  2:3801296/101‑3 (MQ=0)
        ACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCAC                                                                        >  1:3490687/1‑101 (MQ=0)
         CCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACg                                                                       >  2:120748/1‑100 (MQ=0)
          CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                                      >  2:897926/1‑99 (MQ=0)
          CGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACGGACCCCACgg                                                                      >  1:3337467/1‑99 (MQ=0)
           GATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACCGA                                                                     >  2:3255531/1‑101 (MQ=32)
                                                           CCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCC                     <  2:706240/101‑1 (MQ=0)
                                                             GACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA                   <  1:85166/101‑1 (MQ=0)
                                                             GACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA                   <  1:3435385/101‑1 (MQ=0)
                                                             GACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA                   <  1:3364341/101‑1 (MQ=0)
                                                             GACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGA                   >  1:3236324/1‑101 (MQ=0)
                                                               CCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACc                 >  1:61080/1‑100 (MQ=0)
                                                                  ATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGAC              >  2:85152/1‑101 (MQ=1)
                                                                             CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCC   >  2:4319772/1‑101 (MQ=17)
                                                                              CGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCc  <  1:3931124/101‑2 (MQ=17)
                                                                              CGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCCACGGACCCGACCGACCCc  >  1:3662204/1‑100 (MQ=0)
                                                                                                    ||||||||||||||||                                                               
CGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGAC...............................................................................  <  NC_014034/222061‑221962
....................................................................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCCGACCGATCCT  <  NC_014034/222125‑222063

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG