New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221974 =799 (3.430)71 (0.310) 13/196 28.3 0.09 coding (683/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222081 558 (2.350)coding (576/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC....................................................................................................  <  NC_014034/222075‑221974
....................................................................................................CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG  <  NC_014034/222081‑221982
                                                                                                                                                                                                          
                                      ccACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCC                                                                 <  2:2288897/99‑1 (MQ=0)
                                            ccCCCACGGACCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGAT                                                           <  2:2120937/99‑1 (MQ=0)
                                               cgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCG                                                        >  2:497135/3‑101 (MQ=0)
                                               cgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCG                                                        <  1:2636330/99‑1 (MQ=0)
                                                 ACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGAC                                                      <  2:585364/101‑1 (MQ=0)
                                                 ACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGAC                                                      <  1:2729808/101‑1 (MQ=0)
                                                 ACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGAC                                                      <  1:1910795/101‑1 (MQ=0)
                                                  CGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACC                                                     >  2:1812326/1‑101 (MQ=2)
                                                         GACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCA                                              <  2:4545851/101‑1 (MQ=9)
                                                          ACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                                             <  1:2793970/101‑1 (MQ=9)
                                                           CCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG                                            <  1:2671544/101‑1 (MQ=12)
                                                           CCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG                                            >  1:1583124/1‑101 (MQ=16)
                                                            CGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                                           >  1:2282848/1‑101 (MQ=12)
                                                             GATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGg                                          >  1:2969098/1‑100 (MQ=12)
                                                                   ACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGAC                                    >  2:1336018/1‑101 (MQ=0)
                                                                    CGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGACCCGACC                                   >  2:4098349/1‑101 (MQ=11)
                                                                       ATCCGACGGACCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGAc                                >  1:4129024/1‑100 (MQ=0)
                                                                        cCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATC                               <  2:1704547/100‑1 (MQ=9)
                                                                        cCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATC                               >  2:1944498/2‑101 (MQ=12)
                                                                         CCGCCCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCC                              <  1:10425/101‑1 (MQ=0)
                                                                         CCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCC                              >  2:1585429/1‑101 (MQ=12)
                                                                          CGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCC                             <  1:2953315/101‑1 (MQ=9)
                                                                            gCCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                           <  1:3198622/100‑1 (MQ=12)
                                                                            ACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                           >  2:1637334/1‑101 (MQ=12)
                                                                            ACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC                           >  2:1164612/1‑101 (MQ=12)
                                                                              CGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG                         >  2:4506131/1‑101 (MQ=12)
                                                                               GATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                        >  1:2097969/1‑101 (MQ=12)
                                                                               GATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                        >  1:1829505/1‑101 (MQ=12)
                                                                               GATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                        >  1:972700/1‑101 (MQ=12)
                                                                               GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA                        <  1:3607149/101‑1 (MQ=0)
                                                                                ATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAT                       <  2:375838/101‑1 (MQ=12)
                                                                                 TCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATC                      <  1:173510/101‑1 (MQ=12)
                                                                                 TCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGAcc                      >  2:3559117/1‑99 (MQ=9)
                                                                                   CCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                    <  2:3214313/101‑1 (MQ=12)
                                                                                   CCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCG                    <  1:2764728/101‑1 (MQ=12)
                                                                                     ACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                  >  1:160441/1‑101 (MQ=12)
                                                                                     ACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                  >  2:642908/1‑101 (MQ=0)
                                                                                     ACGGACCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGAC                  <  1:1031052/101‑1 (MQ=0)
                                                                                      CGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACC                 <  1:2860732/101‑1 (MQ=12)
                                                                                       GGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                >  2:3133904/1‑101 (MQ=12)
                                                                                       GGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                >  2:1702268/1‑101 (MQ=12)
                                                                                       GGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCG                >  1:2560108/1‑101 (MQ=12)
                                                                                        gatCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGc               >  1:833845/4‑100 (MQ=12)
                                                                                         atCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAc              >  1:1492107/3‑100 (MQ=9)
                                                                                         atCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT              >  1:2839446/3‑101 (MQ=9)
                                                                                         atCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAT              <  2:4041780/99‑1 (MQ=9)
                                                                                          tCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGAcc             >  2:4378462/2‑99 (MQ=2)
                                                                                            CGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC           <  1:346224/101‑1 (MQ=0)
                                                                                            CGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC           <  2:934313/101‑1 (MQ=0)
                                                                                            CGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC           <  1:4103302/101‑1 (MQ=0)
                                                                                            CGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC           <  1:770790/101‑1 (MQ=0)
                                                                                            CGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCC           >  2:3985571/1‑101 (MQ=0)
                                                                                             GACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCc          >  1:4264463/1‑100 (MQ=0)
                                                                                             GACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA          >  1:4207502/1‑101 (MQ=0)
                                                                                             GACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGCTCCCA          >  2:1354084/1‑101 (MQ=0)
                                                                                             GACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA          <  1:2104185/101‑1 (MQ=0)
                                                                                             GACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCA          <  2:1280464/101‑1 (MQ=0)
                                                                                              ACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC         <  1:2900107/101‑1 (MQ=0)
                                                                                              ACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC         >  2:4277015/1‑101 (MQ=0)
                                                                                              ACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCAC         >  2:3821984/1‑101 (MQ=0)
                                                                                               CCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG        <  2:1829379/101‑1 (MQ=0)
                                                                                               CCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACG        >  2:323520/1‑101 (MQ=0)
                                                                                                CGATCCTACGGACCCGTCCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG       <  2:2364124/101‑1 (MQ=0)
                                                                                                CGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG       <  1:3362348/101‑1 (MQ=0)
                                                                                                CGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG       >  2:1125720/1‑101 (MQ=0)
                                                                                                CGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGG       >  2:1253427/1‑101 (MQ=0)
                                                                                                 GATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA      >  2:2105845/1‑101 (MQ=0)
                                                                                                 GATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA      >  1:1751753/1‑101 (MQ=0)
                                                                                                 GATCCGACGGACCCGACCGATCCTACGGACCAGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGA      >  1:4159695/1‑101 (MQ=0)
                                                                                                  ATCCGCCGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAt     <  1:2993759/101‑2 (MQ=0)
                                                                                                   TCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc    <  2:4238997/101‑3 (MQ=0)
                                                                                                                                                                                                          
CCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCC....................................................................................................  <  NC_014034/222075‑221974
....................................................................................................CCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCG  <  NC_014034/222081‑221982

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG