New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	300660 =	255 (1.170)	87 (0.400)	18/184	23.9	0.39	intergenic (+13/+131)	RCAP_rcc00263/RCAP_rcc00264	winged helix family two component transcriptional regulator/hypothetical protein
	?	NC_014034	1608059 =	13 (0.050)					intergenic (+329/‑18)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
Rejected: Position hash score below cutoff.

AAGCGGACTCCCCCCGGGATATTTTCACCAAGGTGAAAGCAGATCCCGGGGTGCCCTTTCACCTTGGTGCAAATATCCCACGGGGGCGCGGGGGTGTGAAACCCCC.GC...................................................................................................  <  NC_014034/300767‑300660 ....................................................................................................ACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCGGCGGCA  >  NC_014034/1608059‑1608157                                                                                                                                                                                                                                                                               tcttgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTC                                               <  1:1139630/93‑1 (MQ=39)                                                              tcttgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTC                                               >  1:2725431/9‑101 (MQ=39)                                                              tcttgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTC                                               >  2:4588512/9‑101 (MQ=39)                                                               cttgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCG                                              <  1:1274579/94‑1 (MQ=39)                                                                ttgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGC                                             >  1:942499/7‑101 (MQ=39)                                                                ttgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGC                                             >  2:2866109/7‑101 (MQ=39)                                                                ttgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGC                                             >  2:864066/7‑101 (MQ=39)                                                                ttgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGC                                             >  1:1755645/7‑101 (MQ=39)                                                                 tgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCG                                            >  1:1431700/6‑101 (MQ=38)                                                                 tgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCG                                            >  1:2009656/6‑101 (MQ=38)                                                                 tgcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGACGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCG                                            >  1:2809604/6‑101 (MQ=38)                                                                  gcctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGG                                           >  1:3344158/5‑101 (MQ=37)                                                                  gcctCAAATATCCCACGGGGGTGCGGGGGGGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGG                                           >  1:4577863/5‑101 (MQ=37)                                                                   cctCAAATATCCCAGGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGT                                          <  1:1161052/98‑1 (MQ=25)                                                                   cctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACGGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGg                                          >  1:3967984/4‑100 (MQ=25)                                                                    ctCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTG                                         >  2:1016810/3‑101 (MQ=34)                                                                     tCAAATATCCCACGGGGGTGCGGGGGTGTTAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGC                                        >  1:1344187/2‑101 (MQ=18)                                                                     tCAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGC                                        <  2:4629107/100‑1 (MQ=33)                                                                      CAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCT                                       >  1:3894216/1‑101 (MQ=32)                                                                      CAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCT                                       >  1:1781193/1‑101 (MQ=32)                                                                      CAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCT                                       >  1:1495424/1‑101 (MQ=32)                                                                       AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                      <  2:1578016/101‑1 (MQ=32)                                                                       AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                      >  2:3601356/1‑101 (MQ=32)                                                                       AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                      >  1:4121184/1‑101 (MQ=32)                                                                       AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                      >  1:1287858/1‑101 (MQ=32)                                                                        AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                     >  2:1270484/1‑101 (MQ=32)                                                                        AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                     <  2:1294949/101‑1 (MQ=32)                                                                         ATATCCCACGGGGGTGCGGGGGTGTGAACCCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    <  1:3958740/101‑1 (MQ=17)                                                                         ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  2:810195/1‑101 (MQ=32)                                                                         ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  1:4478360/1‑101 (MQ=32)                                                                         ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  2:868106/1‑101 (MQ=32)                                                                         ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                    >  1:2724164/1‑101 (MQ=32)                                                                          TATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGG                                   >  1:2131916/1‑101 (MQ=32)                                                                          TATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGG                                   <  1:905454/101‑1 (MQ=32)                                                                           ATCCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGC                                  >  2:59282/1‑101 (MQ=32)                                                                             CCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTC                                >  1:256564/1‑101 (MQ=11)                                                                             CCCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTC                                >  1:3323614/1‑101 (MQ=11)                                                                              CCACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCG                               >  1:4266832/1‑101 (MQ=1)                                                                               CACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTGGCGGTGCTGGGGCTCGG                              >  2:4189264/1‑101 (MQ=1)                                                                               CACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGG                              >  2:3770833/1‑101 (MQ=1)                                                                                ACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                             >  1:239311/1‑101 (MQ=1)                                                                                ACGGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                             >  1:3494316/1‑101 (MQ=1)                                                                                ACGGGGGTGCGGGGGGGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGGGCTGGGGCTCGGG                             >  2:3876767/1‑101 (MQ=0)                                                                                  GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  1:2870174/1‑101 (MQ=1)                                                                                  GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           <  1:627014/101‑1 (MQ=1)                                                                                  GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  1:3905702/1‑101 (MQ=1)                                                                                  GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  2:3357764/1‑101 (MQ=1)                                                                                  GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  2:4477400/1‑101 (MQ=1)                                                                                  GGGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                           >  1:2439124/1‑101 (MQ=1)                                                                                   GGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGGGC                          >  2:3393370/1‑101 (MQ=1)                                                                                   GGGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGC                          >  2:3969419/1‑101 (MQ=1)                                                                                    GGGTGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCT                         <  2:4384047/101‑1 (MQ=1)                                                                                     ggtGCGGGGGTGTGAACCCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        <  1:3601624/98‑1 (MQ=1)                                                                                     ggtGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        >  1:3406527/4‑101 (MQ=1)                                                                                     ggtGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        <  2:1235654/98‑1 (MQ=1)                                                                                     ggtGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        >  2:1525063/4‑101 (MQ=1)                                                                                     ggtGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                        >  2:704335/4‑101 (MQ=1)                                                                                      gtGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCG                       >  2:1863904/3‑101 (MQ=1)                                                                                      gtGCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCG                       >  1:4122887/3‑101 (MQ=1)                                                                                        ggGGGGGGGTGAAACCCCCGGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGG                      <  1:3452477/99‑1 (MQ=2)                                                                                        GCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGGGCTCGGG                     >  2:548541/1‑101 (MQ=1)                                                                                        GCGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGG                     >  2:4423894/1‑101 (MQ=1)                                                                                         CGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGg                    >  1:1899089/1‑100 (MQ=1)                                                                                         CGGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGT                    >  1:1758146/1‑101 (MQ=1)                                                                                          GGGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTC                   <  1:2888433/101‑1 (MQ=1)                                                                                           GGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCT                  >  1:3173785/1‑101 (MQ=1)                                                                                           GGGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCT                  <  2:3921231/101‑1 (MQ=1)                                                                                            GGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 <  2:4399020/101‑1 (MQ=1)                                                                                            GGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 <  1:175157/101‑1 (MQ=1)                                                                                            GGGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                 >  2:1996607/1‑101 (MQ=1)                                                                                             GGTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGG                <  1:4424186/101‑1 (MQ=1)                                                                                              GTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC               <  2:4478065/101‑1 (MQ=1)                                                                                              GTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC               <  2:2902325/101‑1 (MQ=1)                                                                                              GTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC               >  1:226250/1‑101 (MQ=1)                                                                                              GTGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC               <  2:2725233/101‑1 (MQ=1)                                                                                               TGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC              <  1:3640183/101‑1 (MQ=1)                                                                                               TGTGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC              >  1:168321/1‑101 (MQ=1)                                                                                                 tggAACCGCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGAGATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            <  2:4389953/98‑1 (MQ=0)                                                                                                 TGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            >  2:4602531/1‑101 (MQ=1)                                                                                                 TGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            <  1:2720724/101‑1 (MQ=1)                                                                                                 TGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            >  1:645147/1‑101 (MQ=1)                                                                                                 TGAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC            <  1:1525172/101‑1 (MQ=1)                                                                                                  gcAACCCCC.GCAGTTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG           <  2:834355/99‑1 (MQ=1)                                                                                                  GAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG           >  2:3866828/1‑101 (MQ=1)                                                                                                  GAAACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG           >  2:3356485/1‑101 (MQ=1)                                                                                                    AACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGC         <  1:3867113/101‑1 (MQ=1)                                                                                                    AACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGATCGGGCGCTCGGGTCTGGCCACGGC         >  2:727648/1‑101 (MQ=1)                                                                                                                                                                                                                  AAGCGGACTCCCCCCGGGATATTTTCACCAAGGTGAAAGCAGATCCCGGGGTGCCCTTTCACCTTGGTGCAAATATCCCACGGGGGCGCGGGGGTGTGAAACCCCC.GC...................................................................................................  <  NC_014034/300767‑300660 ....................................................................................................ACCCCC.GCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCGGCGGCA  >  NC_014034/1608059‑1608157 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG