New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	2 (0.010)	9 (0.040)	2/170	35.6	0.24	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	= 3329507	54 (0.230)					intergenic (‑42/+27)	argF/argD	ornithine carbamoyltransferase/acetylornithine aminotransferase
Rejected: Position hash score below cutoff.

CCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG....................................................................................................  >  NC_014034/974203‑974307 ...........................................................................................ACAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCCGCTCGGCAAGGAAACCGACATGACCCATTTTCTTGACATCCACACCACCAGCCCGGCCGATCTGCGCTCGATGATCG  <  NC_014034/3329507‑3329408                                                                                                                                                                                                                      GACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCCGGGG                                                                                                     >  2:3814296/1‑101 (MQ=0)                 CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCg                                                                                           <  2:3453023/101‑2 (MQ=0)                 CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGGCCGGGGGgg                                                                                           >  2:3777778/1‑99 (MQ=0)                 CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGGCCGGGGGCg                                                                                           >  2:757891/1‑100 (MQ=0)                  GTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGGCAAATATCCCGGGGGTCCGGGGGCgg                                                                                          >  2:981651/1‑99 (MQ=0)                  GTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACCAATATCCCGGGGGTCCGGGGGCgg                                                                                          >  2:1350373/1‑99 (MQ=0)                    ATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAG                                                                                        >  1:3383763/1‑101 (MQ=0)                          ACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCG                                                                                  >  1:3302467/1‑101 (MQ=0)                          ACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCG                                                                                  >  2:3365408/1‑101 (MQ=0)                                                                                                                                                                                                                CCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG....................................................................................................  >  NC_014034/974203‑974307 ...........................................................................................ACAAATATCCCGGGGGTCCGGGGGCAGAGCCCCCGGCCGCTCGGCAAGGAAACCGACATGACCCATTTTCTTGACATCCACACCACCAGCCCGGCCGATCTGCGCTCGATGATCG  <  NC_014034/3329507‑3329408 Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG