New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	2 (0.010)	9 (0.040)	2/170	35.6	0.24	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	= 3329507	54 (0.230)					intergenic (‑42/+27)	argF/argD	ornithine carbamoyltransferase/acetylornithine aminotransferase
Rejected: Position hash score below cutoff.

TCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCTTC  >  NC_014034/3329407‑3329605                                                                                                         |                                                                                                   tCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGAc                                                                                                    <  2:3644540/101‑1 (MQ=255) tCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGAc                                                                                                    <  1:3166488/101‑1 (MQ=255)  cGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGAcc                                                                                                   <  2:1818191/101‑1 (MQ=255)     tcatcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGAccccc                                                                                                <  1:3734471/101‑1 (MQ=255)     tcatcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGAccccc                                                                                                <  2:441015/101‑1 (MQ=255)     tcatcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGGCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGAccccc                                                                                                <  1:222972/101‑1 (MQ=255)      catcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGGTCC.T.CCCCCCGCAccccc                                                                                                >  2:2783586/1‑101 (MQ=255)          gAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGat                                                                                           <  2:2434156/101‑1 (MQ=255)           aGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCCGGGGCG.CGC.GCCCCCCACCCCCCgggca                                                                                           >  1:689231/1‑99 (MQ=255)            gcgcAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGatat                                                                                         <  1:978507/101‑1 (MQ=255)                aGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCCGGGGGT.CTT.GCCCCCGGCCCCCCgggggttttt                                                                                      >  1:3061874/1‑94 (MQ=255)                  aTCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTgg                                                                                   <  1:2715666/101‑1 (MQ=255)                     ggCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCCGGGGGG.C.T.GCCCCCCGGCCCCCCGGGGATTTTTgggga                                                                                >  1:1833943/1‑98 (MQ=255)                      gCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGGG.C.T.GCCCCCGGGCCCCCCGGGGATTTTTGGCTAg                                                                               >  2:2652674/1‑101 (MQ=255)                             tggtggTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATc                                                                        <  1:307039/101‑1 (MQ=255)                             tggtggTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATc                                                                        <  1:1383266/101‑1 (MQ=255)                             tggtggTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCCGGGGGG.C.TGGCCCCCCCGCCCCCCGGCGCTTTTTGGCAAGAAaaaa                                                                         >  1:223639/1‑100 (MQ=255)                              ggtggtGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGGT.C.T.GCCCCCGGGCCCCCCGGGTATTTTTGGCAAGATAAATCa                                                                       >  1:3772166/1‑101 (MQ=255)                                 ggtgTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGc                                                                    <  1:1586486/101‑1 (MQ=255)                                    gtgGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGGCCCGGGGGGC.C.T.CCCCCCGGCCCCCCGGG.GATTTTTGGGAAAAAAAAAAAGGCCgg                                                                 >  2:3436466/1‑101 (MQ=255)                                        aTGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTgg                                                             <  2:1287840/101‑1 (MQ=255)                                            cAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGttt                                                         <  1:2708633/101‑1 (MQ=255)                                                 aaaTGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGc                                                    <  2:3835189/101‑1 (MQ=255)                                                   aTGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGa                                                  <  2:3155190/101‑1 (MQ=255)                                                    tGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAGGATAAATCAGGCCGGTTGGGTTTCGAGCGaa                                                 <  1:4193707/101‑1 (MQ=255)                                                    tGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGaa                                                 <  1:498716/101‑1 (MQ=255)                                                    tGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGaa                                                 <  1:108880/101‑1 (MQ=255)                                                      ggTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAgc                                               <  2:770684/101‑1 (MQ=255)                                                        tCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCCGACCCCCGGGGCATTTTTGGCAAGATAAATCAAGCCGGGTGGGGTTTGCGCGAAgcgg                                             >  2:3705286/1‑101 (MQ=25)                                                         cATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAgcggc                                            <  1:2957614/101‑1 (MQ=255)                                                         cATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAgcggc                                            <  2:100974/101‑1 (MQ=255)                                                                     cTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAg                                <  2:2344538/101‑1 (MQ=255)                                                                     cTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAg                                <  1:2395874/101‑1 (MQ=255)                                                                     cTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGACCGAAGCGGCGGCGGCATCAAg                                <  1:3436720/101‑1 (MQ=255)                                                                           gAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGgcggcg                          <  2:3315099/101‑1 (MQ=255)                                                                           gAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGgcggcg                          <  1:1594831/101‑1 (MQ=255)                                                                               gg.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACg                      <  2:3857680/101‑1 (MQ=255)                                                                               gg.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGCGGCAAGATAAATCAGGACGGGTGGGGTTCGCGCGAAGCGGCGGGGGCATCCAGGCGGCGGGCg                      >  2:292208/1‑101 (MQ=21)                                                                                    gggggCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGGATCAAGGCGGGGGACGGccc                  >  2:606231/1‑100 (MQ=255)                                                                                    gggggCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCt                  >  1:4117064/1‑101 (MQ=255)                                                                                     ggggCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTc                 >  1:3693245/1‑101 (MQ=255)                                                                                       ggCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCgg               >  2:2930720/1‑101 (MQ=255)                                                                                       ggCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCgg               >  2:4060283/1‑101 (MQ=255)                                                                                       ggCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCgg               >  2:4332086/1‑101 (MQ=255)                                                                                        gCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGCCGGCCTCGGc              >  2:1084886/1‑101 (MQ=255)                                                                                         ct.c.t.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGGCGGCCTCGGcc             <  2:223615/101‑1 (MQ=255)                                                                                         ct.c.t.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGcc             >  2:2513092/1‑101 (MQ=255)                                                                                          t.c.t.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCa            >  2:459751/1‑101 (MQ=255)                                                                                          t.c.t.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCa            <  1:976448/101‑1 (MQ=255)                                                                                            c.t.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCAt           <  2:3061630/101‑1 (MQ=255)                                                                                              t.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATg          >  2:2109131/1‑101 (MQ=255)                                                                                                gCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgt         >  2:3873312/1‑101 (MQ=255)                                                                                                 cccccGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgtc        >  2:150381/1‑101 (MQ=255)                                                                                                 cccccGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgtc        <  1:3705561/101‑1 (MQ=255)                                                                                                 cccccGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgtc        <  1:2519181/101‑1 (MQ=255)                                                                                                   cccGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgtcgt      >  1:3057851/1‑101 (MQ=255)                                                                                                    ccGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATgtcgtc     >  2:573536/1‑101 (MQ=255)                                                                                                     cGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCt    >  1:3561308/1‑101 (MQ=255)                                                                                                     cGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCt    >  2:938186/1‑101 (MQ=255)                                                                                                      ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCCTGTCGTCtt   >  2:1612828/1‑101 (MQ=255)                                                                                                      ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt   >  2:3495198/1‑101 (MQ=255)                                                                                                      ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt   >  2:1708332/1‑101 (MQ=255)                                                                                                      ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt   <  1:2783784/101‑1 (MQ=255)                                                                                                      ggACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCtt   >  1:2439735/1‑101 (MQ=255)                                                                                                       gACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCTTc  >  2:1069565/1‑101 (MQ=255)                                                                                                         |                                                                                                   TCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGCGG.CCGGGGGCT.C.T.GCCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATGTCGTCTTC  >  NC_014034/3329407‑3329605 Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG