New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1699978 =	63 (0.440)	5 (0.040)	2/120	28.8	0.08	coding (1459/1467 nt)	purF	amidophosphoribosyltransferase
	?	NC_014034	= 2995646	46 (0.190)					intergenic (+186/+34)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

TCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGCCCGGCC  >  NC_014034/1699883‑1700078                                                                                                  |                                                                                                     tcGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCt                                                                                                 <  1:445212/101‑1 (MQ=255)   ggCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTg                                                                                               <  1:3914188/101‑1 (MQ=255)        aaCTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCCAGGCGAAATACCCCCTCCGCCCTTCATCTTGAAgac                                                                                          >  2:3405546/1‑99 (MQ=255)             aCCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGc                                                                                     <  1:3782175/101‑1 (MQ=255)                                        ggTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGAt                                                          <  2:3717718/101‑1 (MQ=255)                                              cacgcccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCg                                                     <  2:540674/91‑1 (MQ=25)                                               cccgccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCGCCGGATAAGCGc                                                    >  2:145965/10‑101 (MQ=25)                                                 gcccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGccc                                                  <  1:361603/94‑1 (MQ=37)                                                 aaGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCg                                                 >  1:2482818/1‑101 (MQ=255)                                                    cgggtCGCCTCGGC.GTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCgag                                               >  1:2832272/5‑101 (MQ=37)                                                    cgggtCGCCTCGGC.GTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCgag                                               >  2:4561554/5‑101 (MQ=37)                                                       gtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGaaa                                            <  2:4432783/100‑1 (MQ=38)                                                       gtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGaaa                                            >  1:2412615/2‑101 (MQ=38)                                                        tCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACa                                          <  1:4507670/101‑1 (MQ=255)                                                         cGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACa                                          >  2:1153614/1‑101 (MQ=38)                                                            cTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAggag                                      >  2:1892201/1‑99 (MQ=255)                                                             ctcggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGc                                       >  1:1782454/11‑101 (MQ=255)                                                              cGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTc                                    >  2:795182/1‑101 (MQ=255)                                                               cggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGt                                     >  2:3996622/9‑101 (MQ=255)                                                                ggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTc                                    >  2:2100789/8‑101 (MQ=255)                                                                ggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTc                                    >  1:761438/8‑101 (MQ=255)                                                                ggcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTc                                    >  1:4472076/8‑101 (MQ=255)                                                                 gcgtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCg                                   >  1:767727/7‑101 (MQ=255)                                                                  cgtcagcCGAGGCGAAATACCCCCTCCGCCCTTCATCTTGAAGCCCTTGCCGCTCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGc                                  >  1:1859364/6‑101 (MQ=255)                                                                   gtcagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCa                                 <  2:1258817/97‑1 (MQ=255)                                                                    tcagcCGAGGCGGAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCaa                                >  1:2523883/4‑101 (MQ=255)                                                                     cagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAat                               <  1:1187055/99‑1 (MQ=255)                                                                     cagcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCCGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAat                               >  1:3875477/3‑101 (MQ=255)                                                                      agcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAata                              >  1:3474956/2‑101 (MQ=255)                                                                      agcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAata                              <  1:2228524/100‑1 (MQ=255)                                                                      agcCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGACCGAGAAACAGGCGTCGCAata                              >  2:878774/2‑101 (MQ=255)                                                                        ccGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATAtt                            >  1:1358736/1‑101 (MQ=255)                                                                         cGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTg                           >  1:1101084/1‑101 (MQ=255)                                                                          taGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGc                          >  1:2888099/2‑101 (MQ=255)                                                                          gAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGc                          <  1:2260709/101‑1 (MQ=255)                                                                           aGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCg                         >  2:2106531/1‑101 (MQ=255)                                                                           aGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCg                         >  1:637243/1‑101 (MQ=255)                                                                             gCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGa                       <  1:2163703/101‑1 (MQ=255)                                                                              cGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGAc                      >  1:2636678/1‑101 (MQ=255)                                                                               gAAATACTCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACa                     >  1:876200/1‑101 (MQ=255)                                                                                aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg                    >  2:3717013/1‑101 (MQ=255)                                                                                aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg                    >  2:2758187/1‑101 (MQ=255)                                                                                aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg                    >  2:3005957/1‑101 (MQ=255)                                                                                aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg                    >  1:4093787/1‑101 (MQ=255)                                                                                aaaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAg                    >  1:3812141/1‑101 (MQ=255)                                                                                 aaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAgg                   >  1:3994554/1‑101 (MQ=255)                                                                                 aaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAgg                   >  1:2335026/1‑101 (MQ=255)                                                                                 aaTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAgg                   >  1:2103416/1‑101 (MQ=255)                                                                                  aTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGc                  <  2:1058464/101‑1 (MQ=255)                                                                                  aTACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGc                  >  1:2042680/1‑101 (MQ=255)                                                                                    tcccccTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGt                <  1:2359928/100‑1 (MQ=255)                                                                                    aCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGt                >  2:1877326/1‑101 (MQ=255)                                                                                    aCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGt                >  2:2220344/1‑101 (MQ=255)                                                                                     cccccTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGtt               <  1:3778086/101‑1 (MQ=255)                                                                                     cccccTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGtt               >  2:2105551/1‑101 (MQ=255)                                                                                     cccccTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGtt               >  2:3276215/1‑101 (MQ=255)                                                                                     cccccTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGta               >  2:2359766/1‑100 (MQ=255)                                                                                      ccccTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTg              <  2:3811856/101‑1 (MQ=255)                                                                                         cTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTcg           <  2:951170/101‑1 (MQ=255)                                                                                         cTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTcg           >  1:2687949/1‑101 (MQ=255)                                                                                           cAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTcgcg         >  2:1752518/1‑101 (MQ=255)                                                                                           cAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTcgcg         >  2:1278956/1‑101 (MQ=255)                                                                                           cAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTcgcg         >  2:1249735/1‑101 (MQ=255)                                                                                           cAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTcgcg         >  1:3206366/1‑101 (MQ=255)                                                                                           cAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTcgcg         >  2:4593170/1‑101 (MQ=255)                                                                                           cAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTcgcg         >  1:106335/1‑101 (MQ=255)                                                                                             gCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGcc       <  1:2567600/101‑1 (MQ=255)                                                                                              cccTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGccc      >  2:3341703/1‑101 (MQ=255)                                                                                              cccTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGccc      >  2:2040495/1‑101 (MQ=255)                                                                                              cccTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGccc      <  1:2100929/101‑1 (MQ=255)                                                                                               ccTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGCCCg     >  1:2301067/1‑101 (MQ=255)                                                                                                 ttCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGCCCGGc   >  1:4339979/1‑101 (MQ=255)                                                                                                  tCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGCCCGGcc  >  2:2282741/1‑101 (MQ=255)                                                                                                  tCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGCCCGGcc  >  2:3542219/1‑101 (MQ=255)                                                                                                  |                                                                                                     TCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGCAATATTGCGGACAGGCGTTGTCGCGCCCGGCC  >  NC_014034/1699883‑1700078 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG