New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2238830 =	NA (NA)	2 (0.010)	2/184	37.1	0.02	coding (200/1575 nt)	RCAP_rcc02072	nonfunctional major facilitator superfamily protein
	?	NC_014034	3034577 =	191 (0.800)					coding (535/2472 nt)	torA	trimethylamine‑N‑oxide reductase
Rejected: Position hash score below cutoff.

TTTACGAAGTCGCGGGCATTGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGCTTGGCCTGCAGGTCGCGGCGCTGGTCGCGCTGACGCAGCTGGACCCGGGCTGGTCGATCCCCG  >  NC_014034/2238779‑2238928                                                    |                                                                                                   tttACGAAGTCGCGGGCATTGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGGTGGcgcggcgggc                                                   >  1:2121237/1‑92 (MQ=1) tttACGAAGTCGCGGGCATTGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGCTGgggccttcgggg                                                   >  1:2865348/1‑91 (MQ=1)    aCGAAGTCGCGGGCATTGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGCTGGCCCGCCGGCcggg                                                >  1:775715/1‑99 (MQ=1)       aaGTCGCGGGCATTGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGCTGGGCTGCCGGGGgcgggg                                             >  1:787246/1‑99 (MQ=1)           cgcgGGCATTGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGTTGGGCTGCCGGGCGGGGGGCCgg                                         >  1:4168843/1‑101 (MQ=1)                  aTTGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGGTGGGCCGCCGGGCGCGGGGCCGGGCgggcc                                  >  1:3939309/1‑100 (MQ=1)                    tGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGGTGGGCCGCCGGGCGCGGGGCGGGGGgcgccgg                                >  1:1651488/1‑98 (MQ=1)                     gCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGGTGGGCCGCGGGGCGCGGGGCCgggggcggcggc                               >  1:1040150/1‑91 (MQ=1)                            aTCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGTTGGGCTGCCGGTGGCGGGGCCGGGCGGGCCGGCGccggcg                        >  2:2496789/1‑96 (MQ=1)                            aTCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGCCTGGGCTGCGGGGGGCGGGGCCGGGCGGGCCGGCGccccgg                        >  2:2666473/1‑96 (MQ=0)                               ttGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGTTGGCCCGCCGGGGGCGGCGCCGGGGGCGCCGGCGCCGCCgggc                     >  1:76805/1‑99 (MQ=0)                                     cgGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGGTTGGGCTGCCGGGCGCGGGGCCGGGCGGGCCGGCGCAGGCGGGCCCCGGc               >  1:3301973/1‑101 (MQ=0)                                                  ggcgCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGCTTTGCCTGCAGGGCGCGGGGCCGGTCGCGCCGGCGCAGGCGGGCCCGGGCGGGGCgggtcccc  >  2:4153468/1‑94 (MQ=0)                                                    |                                                                                                   TTTACGAAGTCGCGGGCATTGCCACCAATCTTGGCGCGGGCTGGCTGGCGGCGCGGTTCGGCCTGGCCGCCACGCTTTACGGCGGGCTTGGCCTGCAGGTCGCGGCGCTGGTCGCGCTGACGCAGCTGGACCCGGGCTGGTCGATCCCCG  >  NC_014034/2238779‑2238928 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG