New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	390805 =	32 (0.200)	10 (0.060)	3/132	29.4	0.32	intergenic (‑121/+168)	mipZ/rpmE	chromosome partitioning protein MipZ/50S ribosomal protein L31
	?	NC_014034	= 1193597	11 (0.050)					intergenic (+62/‑189)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
Rejected: Position hash score below cutoff.

ACCGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGA  >  NC_014034/1193500‑1193686                                                                                                    |                                                                                             aCCGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATAttt                                                                                           <  2:353755/101‑1 (MQ=255)  ccGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTc                                                                                          <  2:2359988/101‑1 (MQ=255)  ccGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTc                                                                                          <  2:2034300/101‑1 (MQ=255)   cGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCg                                                                                         <  2:2095890/101‑1 (MQ=255)   cGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCg                                                                                         <  1:2235417/101‑1 (MQ=255)   cGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCg                                                                                         <  1:1146439/101‑1 (MQ=255)   cGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCg                                                                                         <  1:1422632/101‑1 (MQ=255)    gATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGc                                                                                        >  2:642965/1‑101 (MQ=255)    gATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGc                                                                                        <  2:881148/101‑1 (MQ=255)      tCTGGTCGAGGCGCGGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCt                                                                                      <  1:247501/101‑1 (MQ=255)      tCTGGGCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGGCt                                                                                      <  1:2661362/101‑1 (MQ=255)       cTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTc                                                                                     >  1:2998093/1‑101 (MQ=255)       cTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTc                                                                                     <  2:2806685/101‑1 (MQ=255)       cTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTc                                                                                     >  1:3202889/1‑101 (MQ=255)       cTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTc                                                                                     <  2:3760521/101‑1 (MQ=255)       cTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTc                                                                                     <  1:485263/101‑1 (MQ=255)       cTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGACCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTc                                                                                     <  2:2806686/101‑1 (MQ=255)         ggTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCgg                                                                                   <  2:3589982/101‑1 (MQ=255)          gTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCggg                                                                                  <  1:4382017/101‑1 (MQ=255)          gTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCggg                                                                                  <  1:1208072/101‑1 (MQ=255)           tCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGc                                                                                 <  2:2370859/101‑1 (MQ=255)             gAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCaa                                                                               <  1:148995/101‑1 (MQ=255)             gAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCaa                                                                               >  1:3018814/1‑101 (MQ=255)              aGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAg                                                                              <  2:19490/101‑1 (MQ=255)                 cgcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGccc                                                                           <  1:722184/101‑1 (MQ=255)                 cgcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGccc                                                                           <  1:2097054/101‑1 (MQ=255)                  gcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCg                                                                          >  2:2351803/1‑101 (MQ=255)                   cTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGa                                                                         <  2:288035/101‑1 (MQ=255)                   cTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGa                                                                         <  2:2765081/101‑1 (MQ=255)                    tGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAg                                                                        <  2:4220866/101‑1 (MQ=255)                      aagaaAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGc                                                                      <  2:1690064/101‑1 (MQ=255)                         aaaGCGGTCTGATCCGGTTTCAGAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCCTTTTCCTTCGTTGCAGGATATTTCGCCTCAGGCAAGCCCGTGGCGAc                                                                   <  2:753741/101‑1 (MQ=255)                          aaGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGAcc                                                                  <  2:2221664/101‑1 (MQ=255)                              ggTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgc...g                                                           <  1:4450781/101‑1 (MQ=255)                              ggTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgc...g                                                           <  1:4593993/101‑1 (MQ=255)                                  tGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgccgcgt                                                          >  2:4159425/1‑96 (MQ=255)                                   gAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                      <  1:712576/101‑4 (MQ=255)                                    aGCCGGTTTCAAAAGATCAAGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCAGAGGCGACCcgcccgccgg                                                        >  1:4616966/1‑94 (MQ=38)                                     gCCGGTTGCAAAAGATCGCGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                    <  2:3968196/101‑6 (MQ=255)                                      ccGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggggc                                                   >  1:3980567/1‑95 (MQ=255)                                      ccGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctc                                                   <  2:2480362/101‑7 (MQ=255)                                       cGGTTTCAAAAGATCAGGGGGAAGGGGG.CTT.GGGCCCCTTTTTTAATGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                  <  1:1385114/101‑8 (MQ=25)                                       cGGTTAAAAAAGATCAGGGGGAGGGGGG.CTT.CGCCCCCTTTTTTCATGGGTTGCAGGATTTTTCGCCTGGGGCAACCCCGAGGCGACCCGC...ggggggctcc                                                  <  1:1577071/101‑8 (MQ=21)                                          tttCAAAAGATCAGGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctccgcc                                               <  1:2872118/101‑11 (MQ=37)                                                   aTCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                         <  2:2997864/101‑1 (MQ=21)                                                     cagggggAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                       <  2:2264610/98‑1 (MQ=21)                                                     cACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGGGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                       <  2:3018585/101‑1 (MQ=21)                                                       gggggAAAGGGC.CTTGCGCCCCCCTTTTCCCTGCGTTCGAGGATATTCCCCCCGGGGCAGCCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCAccccc                                      <  1:2351965/100‑1 (MQ=2)                                                        ggggAGGGGGG.CTG.CGGCCCCCTTTTTCGTGCGTTGCAGGATATTTCGCCTCGGGCAGGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCg                                    <  1:2098958/101‑1 (MQ=17)                                                          ggAAGGGGGCCTT.CGCCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCCCGGGCAGGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCgg                                   <  2:2124239/101‑1 (MQ=14)                                                                              cttttttCTTGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaaaa                <  2:4616665/99‑1 (MQ=11)                                                                                tttttCATGGTTTGCAGGATTTTCCGCCTGGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAgc              <  1:931851/101‑1 (MQ=11)                                                                                     ctgggtttGCAGGATTTTCCGCCGCGGCCAGCCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAg         <  2:3202646/95‑1 (MQ=11)                                                                                            tgaaGGATTTTTCGCCTGGGGCAGGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGa  <  2:3733984/98‑1 (MQ=11)                                                                                                    |                                                                                             ACCGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGA  >  NC_014034/1193500‑1193686 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG