New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | 1395832 = | 150 (1.010) | 35 (0.230) | 9/132 | 21.8 | 0.20 | intergenic (+644/‑287) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
? | NC_014034 | = 1434845 | 132 (0.580) | intergenic (‑624/‑334) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
Rejected: Position hash score below cutoff. |
ATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC........................................................................... < NC_014034/1395875‑1395832
..............................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGCC < NC_014034/1434845‑1434805
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ggaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGG > 2:675572/6‑101 (MQ=0)
ggaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGG > 2:3301589/6‑101 (MQ=0)
gaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGG > 2:278165/5‑101 (MQ=0)
gaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGG > 2:3784510/5‑101 (MQ=0)
acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG > 2:2645069/3‑101 (MQ=0)
acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG < 1:19679/99‑1 (MQ=0)
acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG < 1:2423335/99‑1 (MQ=0)
acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG > 1:3050161/3‑101 (MQ=0)
cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG > 2:2925726/2‑101 (MQ=0)
cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG < 1:861629/100‑1 (MQ=0)
cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG > 2:3746239/2‑101 (MQ=0)
cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG < 1:123665/100‑1 (MQ=0)
CGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGA < 1:3123024/101‑1 (MQ=0)
CGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGA < 1:280896/101‑1 (MQ=0)
GGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAG > 1:3503333/1‑101 (MQ=0)
gcaCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC > 2:1451528/4‑101 (MQ=0)
gcaCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCACTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC > 1:826396/4‑101 (MQ=0)
caCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG > 2:3831300/3‑101 (MQ=1)
caCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG < 2:734698/99‑1 (MQ=1)
caCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG > 2:195485/3‑101 (MQ=1)
aCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA < 1:2790/100‑1 (MQ=1)
CAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC > 2:1205994/1‑101 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACt > 2:484907/1‑100 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc > 2:4385113/1‑100 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACt > 1:1414330/1‑100 (MQ=1)
TTTCGATCCCCGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtcc < 1:3976466/101‑4 (MQ=0)
TTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtcc < 2:3274598/101‑4 (MQ=0)
TTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccg > 1:2480993/1‑97 (MQ=0)
TTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccg > 2:781863/1‑97 (MQ=0)
TTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccc > 2:3570191/1‑97 (MQ=0)
TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgt < 2:1200012/101‑6 (MQ=0)
CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgtc < 2:1155358/101‑7 (MQ=0)
CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgtc > 1:2059839/1‑95 (MQ=0)
GATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgtcc > 1:3518542/1‑94 (MQ=0)
ATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACtccgtccc < 2:946460/101‑9 (MQ=0)
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ATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC........................................................................... < NC_014034/1395875‑1395832
..............................................................................TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGCC < NC_014034/1434845‑1434805
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 39 ≤
ATCG
|