New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732870 =	21 (0.120)	31 (0.180)	13/154	21.7	0.51	intergenic (‑294/‑109)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	= 2474937	39 (0.170)					intergenic (‑100/+26)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

CTGAACTGGGTCATCGGGCGCTCCTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCG...........................................................................................  <  NC_014034/1732992‑1732870 ....................................................................................................TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTGCGCCCCCCCGCACCCCCCGCCTTGCGTATTTGGCCAAGGAAAAGCCGGGCCGTTCGGGTGGGGGGGGCCGCGGTTT  <  NC_014034/2474937‑2474847                                                                                                                                                                                                                                               CTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGA                                                                                            >  1:1409582/1‑101 (MQ=1)                        CTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGA                                                                                            >  1:3126213/1‑101 (MQ=1)                         TTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGAC                                                                                           >  1:4210321/1‑101 (MQ=1)                          TTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACC                                                                                          >  1:2420127/1‑101 (MQ=1)                           TGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCC                                                                                         <  1:1726404/101‑1 (MQ=1)                            GGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCG                                                                                        <  2:2646967/101‑1 (MQ=1)                                 GCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGG                                                                                   >  2:198001/1‑101 (MQ=1)                                  CGTTTAGCGGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGG                                                                                  <  1:2941094/101‑1 (MQ=1)                                   GTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGG                                                                                 >  2:3192987/1‑101 (MQ=1)                                   GTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGG                                                                                 >  1:3007977/1‑101 (MQ=1)                                   GTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCCGGGGG                                                                                 >  1:605999/1‑101 (MQ=1)                                    TTTAGCGGCGCGGGGCGGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGC                                                                                <  2:862915/101‑1 (MQ=0)                                    TTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGg                                                                                >  1:4344341/1‑100 (MQ=1)                                    TTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGC                                                                                <  2:2410440/101‑1 (MQ=1)                                      TAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGgct                                                                              >  1:1344628/1‑98 (MQ=1)                                       gGCAGCGCGGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAGGCCCGAGGCGACCCGCGGGGGGCTtc                                                                             <  2:4359633/100‑3 (MQ=9)                                       AGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGgctg                                                                             >  1:2640157/1‑97 (MQ=1)                                       AGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtc                                                                             >  2:2973217/1‑99 (MQ=31)                                        GCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGggtgc                                                                            >  2:4149364/1‑96 (MQ=1)                                          AGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTttccc                                                                          >  2:376172/1‑96 (MQ=11)                                          AGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtcccc                                                                          >  2:4147154/1‑96 (MQ=14)                                           gggcgGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCC                                                                         <  2:1727054/96‑1 (MQ=12)                                           GCGCCGGGCCGAAAGGGAAAGCGACGCGGGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCC                                                                         <  1:2587551/101‑1 (MQ=12)                                           GCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGGGGCGACCCGCGGGGGGCTTCACCC                                                                         <  1:2246995/101‑1 (MQ=12)                                           GCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCCGGGGGgggggccc                                                                         >  2:805085/1‑93 (MQ=0)                                              gCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCC                                                                      <  2:3057275/100‑1 (MQ=17)                                              CCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCC                                                                      <  2:132787/101‑1 (MQ=17)                                              CCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCC                                                                      <  1:2504441/101‑1 (MQ=17)                                               CGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGGTTCACCCCCCC                                                                     >  1:1779096/1‑101 (MQ=9)                                               CGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGGTTCACCCCCCC                                                                     >  1:649247/1‑101 (MQ=9)                                                  GCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCCgccc                                                                  >  2:2950318/1‑97 (MQ=17)                                                                                                                                                                                                                        CTGAACTGGGTCATCGGGCGCTCCTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCG...........................................................................................  <  NC_014034/1732992‑1732870 ....................................................................................................TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTGCGCCCCCCCGCACCCCCCGCCTTGCGTATTTGGCCAAGGAAAAGCCGGGCCGTTCGGGTGGGGGGGGCCGCGGTTT  <  NC_014034/2474937‑2474847 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG