New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1732870 =21 (0.120)31 (0.180) 13/154 21.7 0.51 intergenic (‑294/‑109) RCAP_rcc01601/tgt FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
?NC_014034 = 2474937 39 (0.170)intergenic (‑100/+26) RCAP_rcc02301/engA hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

AAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCCGC.GGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCA  >  NC_014034/2474847‑2475036
                                                                                           |                                                                                                     
aaaCCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGTCGCCCC.ggggt                                                                                           >  2:2458213/1‑99 (MQ=255)
aaaCCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGCGGCCCC.ggggt                                                                                           >  2:2926493/1‑99 (MQ=37)
   ccGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGCCTC.CGGCCTGc                                                                                        >  2:4185238/1‑101 (MQ=25)
             ccccACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGCCGCCTC.GCGCCGGCCCCCGGCgcg                                                                              >  1:1007509/1‑99 (MQ=21)
                     gAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGGGCCTC.GGGGTTTCCCCCGGCGGGCTCAGccc                                                                      >  1:295534/1‑101 (MQ=18)
                        cGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGTCGCCTC.GGGCTTGCCCGCGGCGGCATCAGCCCCTc                                                                   >  1:1085907/1‑101 (MQ=21)
                        cGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGGGCC.GGGGCTGCCCGCCGCGGCCGCAGCCCCTc                                                                   >  2:28160/1‑101 (MQ=16)
                           cccGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGGCTC.GGGGGTGGCCCCGGCGGCATCCGCCCTCCGGt                                                                >  2:3391675/1‑101 (MQ=18)
                           cccGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGCCCC.CGGGTTGCCCGCGGGGGCAACAAcccgttggg                                                                >  1:2092211/1‑95 (MQ=16)
                              ggCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGCGGGGCCGCCCC.GGGGTGGCCCGGGGGGCCATCGCCCCTCCgtgtt                                                              >  2:3751680/1‑97 (MQ=12)
                              ggCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGTCGCCCC.GGGGTTGCCCGGGGGGGCCTCAGCCCCTCGGtttt                                                             >  2:2560350/1‑100 (MQ=21)
                                 ttttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGTCGCCTC.GGGCCTGCCCCCGGCGGCATCAGCCCCTCGGTTTCTAg                                                          >  2:1751685/1‑101 (MQ=18)
                                        tGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGCCTC.GGGCTTGCCCGCGGGGACATCAGCCCCTCCGTTTTGGGGGGAGGc                                                   >  1:4191069/1‑101 (MQ=18)
                                         ggCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGCCCC.GGGGTTGCCCGCGGCGACAGCACCCCTTCCGTTTCGAGGGCCGGcc                                                  >  2:2768918/1‑101 (MQ=21)
                                          gCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGCCCC.GGGCGTGCCCCCGGGGGCAACAGCCCCTCGGGTTTGGggggggggcc                                                 >  2:3887592/1‑94 (MQ=12)
                                                tACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGCCTC.GGGCTTGCCCGGGGCGGCATCAGCCCCTCGGGTTCGAGGGCAGGGCCCTG.Tcc                                          >  2:1451799/1‑101 (MQ=18)
                                                     aaGGCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGACGCCTC.GGGCTTTCCCGAGGCGACATCAGCCCTTCGGGTTAGAGGGCAGGCCCTTG.TCCCtgcg                                     >  1:562790/1‑101 (MQ=21)
                                                       ggCGGGGGGTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGCCTC.GGGCTTTCCCGCGGGGCCATCAGCCCTTCGGTTTTGAGGGGAGGCCCTTG.TCCTtgcggg                                   >  1:2660315/1‑99 (MQ=21)
                                                        gCGGGGGGTGC.GGGGGGCGCAGCCCACCGC.GGGTCGCCCC.GGGGTTGCCCGGGGGGGCACAACCCCTTCGGGTTCGAGGGGAGGCCCTTG.TCCTtgcgtgc                                  >  1:553017/1‑101 (MQ=16)
                                                          ggggggTGC.GGGGGGCGCAGCCCCCCGC.GGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCCTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTgcgg                                >  1:3675892/1‑101 (MQ=255)
                                                          ggggggTGC.GGGGGGCGCAGCCCCCCGC.GGGTCGCCCC.GGGGTTGCCCCAGGCGCCACCAGCCCTTCGGGTTCCAGAGCAGGGCCATGTTCCTtgcggcgg                                 >  2:201284/1‑97 (MQ=9)
                                                          ggggggTGC.GGGGGGCGCAGCCCCCCGC.GGGGCGCCCC.GGGGTTGCCCCGGGCGGCATCAGCCCTTCGGTTTTGCGGGCCGGCCCTTG.TCCTTGCGTgcgg                                >  2:1526615/1‑101 (MQ=21)
                                                                   cggggggCGCAGCCCCCCGC.GGGTCGCCCCGGGGCTTCCCCG.GGCGGCATCAGCCCCTCGGGTTCGAGGGGAGGGCCCTT.TCCTTTCGTgcgggggggttt                        >  1:3161142/2‑93 (MQ=12)
                                                                      ggggCGCAGCCCCCCGC.GGGTCGCCTC.GGGGTTGCCCGGGGGGACAACAGCCCTTCGGTTTTGAGGGCGGGGCCTTG.TCCTTGCGTGCGGCGGGTtttttc                     >  1:1857551/1‑101 (MQ=25)
                                                                      ggggCGCAGCCCCCCGC.GGGGCGCCTC.CGGCTTGCCCGAGGCGGCATCAGCCCCTCGGGTTCGGGGGCAGGCCCCTG.TCCTTTCGTGCGGCGGGGttcttc                     >  1:2827954/1‑101 (MQ=255)
                                                                       gggCGCAGCCCCCCGC.GGGTCCCCTC.CGGCTTGCCCGAGGAGGCATCCTCCCCTCGGTGTTCACGGCCGGCCCTTG.GTCTTGCGTGCGGCGTGGttctttg                    >  1:2907974/1‑99 (MQ=16)
                                                                        ggCGCAGCCCCCCGC.GGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGc                   >  1:1776132/1‑101 (MQ=255)
                                                                           gcAGCCCCCCGC.GGGTCGCCTC.GGGCTTGCCCGAGGGGGCATCAGCCCTTCGGGTTTGCGGGCAGGCCCCTG.TCCTTGCGTGCGGCGGGGTTCTTCGCCTc                >  1:1924696/1‑101 (MQ=25)
                                                                           gcAGCCCCCCGC.GGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCCTG.TCCTTGCGTGCGGCGGGTTTCTTCGCCTc                >  2:1204986/1‑101 (MQ=255)
                                                                            cgcagcggggc.gGGGCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCg               <  2:4386146/92‑1 (MQ=39)
                                                                             aGCCCCCCGC.GGGTCGCCCC.GGGGCTGCCCGACGCGAAATCACCCCTTCGGCTTTGAGGGCAGGCCCCTG.TCCTTGCGTGGCGCCAGGTTCTTCGGCTccc              >  2:4180681/1‑99 (MQ=12)
                                                                              cctgcccGC.GGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGAc             <  2:1098551/97‑1 (MQ=255)
                                                                                  cccGC.GGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGGGTTTCTTCGCCTCgcccggc         >  1:1404323/1‑95 (MQ=255)
                                                                                      c.gGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTTTTCGCCTCGCCCTGCTTCg     >  1:1582145/1‑101 (MQ=255)
                                                                                      c.gGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCg     >  2:2425530/1‑101 (MQ=255)
                                                                                      c.gGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCg     >  1:3517973/1‑101 (MQ=255)
                                                                                        gggTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt    >  1:463624/1‑101 (MQ=255)
                                                                                        gggTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt    >  1:3998831/1‑101 (MQ=255)
                                                                                        gggTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt    >  1:3368738/1‑101 (MQ=255)
                                                                                        gggTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt    >  1:2155984/1‑101 (MQ=255)
                                                                                        gggTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt    >  1:2135027/1‑101 (MQ=255)
                                                                                          gTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCa  <  1:691162/101‑1 (MQ=255)
                                                                                          gTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCCCGACGTGCTTCGTCa  <  1:3751933/101‑1 (MQ=255)
                                                                                           |                                                                                                     
AAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCCGC.GGGTCGCCTC.GGGCTTGCCCGAGGCGACATCAGCCCTTCGGTTTCGAGGGCAGGCCCTTG.TCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCA  >  NC_014034/2474847‑2475036

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG