New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221943 =207 (0.970)5 (0.020) 2/188 35.1 0.01 coding (714/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222062 695 (3.070)coding (595/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CACG.......................................................................................................  <  NC_014034/221946‑221943
..........ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACC  <  NC_014034/222062‑221966
    ||||||                                                                                                 
gACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGCTCCCACGGACCCGACCGATCCCA        >  1:164024/2‑101 (MQ=255)
 ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAGGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCAC       >  2:3849680/1‑101 (MQ=9)
 ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGCCCGATCCCAC       >  1:457253/1‑101 (MQ=9)
 ACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGAGCCCcc       >  2:4040744/1‑99 (MQ=255)
   GGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCACACcg     >  2:1615586/1‑99 (MQ=0)
      CCCCCCGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGATCCGACCGATCCCACGGAtc  <  2:608054/101‑3 (MQ=9)
    ||||||                                                                                                 
CACG.......................................................................................................  <  NC_014034/221946‑221943
..........ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACC  <  NC_014034/222062‑221966

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 41 ≤  ATCG