New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221953 =245 (1.130)30 (0.140) 35/192 15.1 0.09 coding (704/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222101 377 (1.670)coding (556/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC........................................................................................................  <  NC_014034/222046‑221953
..................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATC  <  NC_014034/222101‑222002
                                                                                              ||||                                                                                                    
cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                                   <  1:2781782/99‑1 (MQ=0)
cgACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCG                                                                                                   >  2:3862901/3‑101 (MQ=0)
 gACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGA                                                                                                  >  1:1284586/2‑101 (MQ=0)
    GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                               >  2:3983283/1‑101 (MQ=0)
    GGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCG                                                                                               >  1:1684638/1‑101 (MQ=0)
       cCCGACCGATCCCCCGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATC                                                                                            <  1:1529639/100‑1 (MQ=0)
          GACTGATACCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCA                                                                                         <  2:602321/101‑1 (MQ=0)
          GACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACgggcccca                                                                                         >  2:3949558/1‑93 (MQ=0)
           gCCGATCCCACGGACCCGTCCGATCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                                                        <  2:584823/100‑1 (MQ=0)
           cCCGACCCCCCGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCAC                                                                                        <  2:4250071/100‑1 (MQ=0)
              GATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGACCCGACGGACCCGACCGCTCCCACGGc                                                                                     >  2:3737044/1‑100 (MQ=0)
                 CCCACGGACCCGACCGATCCCACGGACCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCC                                                                                  <  1:2809759/101‑1 (MQ=0)
                  CCACGGCCCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCG                                                                                 <  1:4100213/101‑1 (MQ=0)
                   CACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCACACGGACCCGACCGATCCGACGGACCCGACCGATCCCACAGACCCGA                                                                                >  1:3994096/1‑101 (MQ=0)
                    ACGGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCGACGGACCCGAC                                                                               >  2:3977186/1‑101 (MQ=0)
                      GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGG                                                                             >  1:1404754/1‑101 (MQ=9)
                      GGACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGCACCCGACGa                                                                             >  1:971583/1‑100 (MQ=255)
                       GACCCGACCGATCCCACGGATCCCACCGATCCGACGGGCCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGA                                                                            <  1:4089349/101‑1 (MQ=255)
                       GACCCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGTCCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGA                                                                            >  1:1633943/1‑101 (MQ=255)
                        ACCCGACCGACCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGAC                                                                           <  1:4245885/101‑1 (MQ=255)
                          CCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC                                                                         >  1:917936/1‑101 (MQ=12)
                          CCGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCC                                                                         >  2:1385029/1‑101 (MQ=12)
                           CGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc                                                                        >  1:3319533/1‑100 (MQ=255)
                           CGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc                                                                        >  2:1342958/1‑100 (MQ=255)
                           CGACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCc                                                                        >  2:1656983/1‑100 (MQ=12)
                            GACCGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCca                                                                       >  2:3554516/1‑99 (MQ=255)
                               CGATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCG                                                                    >  2:3044139/1‑101 (MQ=255)
                                GATCCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCGA                                                                   >  1:3737507/1‑101 (MQ=255)
                                   CCCACGGATCCCACCGATCCGACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACCGATCC                                                                >  2:4103545/1‑101 (MQ=255)
                                    CCACGGATCCCACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCg                                                               <  1:185306/101‑2 (MQ=0)
                                                      cgACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCC                                             >  2:1974226/3‑101 (MQ=255)
                                                       CACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCA                                            <  2:4035154/101‑1 (MQ=255)
                                                        ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                           >  2:4083834/1‑101 (MQ=255)
                                                        ACGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCAC                                           <  1:2108375/101‑1 (MQ=255)
                                                         CGGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACG                                          <  2:1387222/101‑1 (MQ=255)
                                                          GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGG                                         >  1:1137536/1‑101 (MQ=255)
                                                          GGACCCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGG                                         >  1:2624539/1‑101 (MQ=255)
                                                              CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                     >  2:1548767/1‑101 (MQ=0)
                                                              CCGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCC                                     >  1:1769037/1‑101 (MQ=0)
                                                               CGACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCG                                    <  1:3453009/101‑1 (MQ=0)
                                                                GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGA                                   >  1:758390/1‑101 (MQ=0)
                                                                GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGA                                   >  2:1282281/1‑101 (MQ=0)
                                                                GACCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGA                                   >  1:2821956/1‑101 (MQ=0)
                                                                  CCGATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACC                                 <  2:1805964/101‑1 (MQ=0)
                                                                    GATCCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGA                               >  1:1989688/1‑101 (MQ=0)
                                                                       CCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                            <  1:694404/101‑1 (MQ=0)
                                                                       CCCACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGACCCGACGGACCCCACGGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCC                            >  1:3469310/1‑101 (MQ=0)
                                                                                           cACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCA        <  2:2999553/100‑1 (MQ=0)
                                                                                            ACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC       <  1:190448/101‑1 (MQ=0)
                                                                                            ACGGACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCAC       >  1:3396661/1‑101 (MQ=0)
                                                                                             CGGACCCGACCGATCCCACGGACCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACG      <  1:2337750/101‑1 (MQ=0)
                                                                                                ACCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAc   >  1:1202808/1‑100 (MQ=0)
                                                                                                 CCCGACCGATCCCACGGACCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGAcc  <  1:1611775/101‑3 (MQ=0)
                                                                                              ||||                                                                                                    
CCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGACCCGACCGATCCGAC........................................................................................................  <  NC_014034/222046‑221953
..................................................................................................CCGACCGATCCCACGGACCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACCGATCCCACGGATC  <  NC_014034/222101‑222002

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG