New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 221992 =856 (4.670)23 (0.130) 8/162 26.3 0.04 coding (665/2748 nt) RCAP_rcc00185 hypothetical protein
?NC_014034 = 222125 194 (0.860)coding (532/2748 nt) RCAP_rcc00185 hypothetical protein
Rejected: Position hash score below cutoff.

CGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC........................................................................  <  NC_014034/222037‑221992
.................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222125‑222073
                                              |||||||||||||||||||                                                     
ccacgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCC                   >  2:1137504/6‑101 (MQ=0)
 cacgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCCA                  >  2:991629/5‑101 (MQ=0)
  acgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCAC                 >  1:2564456/4‑101 (MQ=0)
  acgGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCAC                 <  2:1768918/98‑1 (MQ=0)
   cgGATCCGACGGACCCGCCCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG                <  1:995276/99‑1 (MQ=0)
   CCGACCCTACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACG                <  1:2118880/101‑1 (MQ=0)
    gGATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGG               <  1:1974355/100‑1 (MQ=0)
      atgcgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAt             >  1:3301270/6‑100 (MQ=0)
      ATCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCCCGGAt             >  1:866709/1‑100 (MQ=0)
       TCCGACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGAtc            <  2:171136/101‑3 (MQ=0)
        ccgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCC           <  1:1725886/98‑1 (MQ=0)
        ccgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCC           >  1:2815416/4‑101 (MQ=0)
         cgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCG          >  2:3562870/3‑101 (MQ=0)
         cgACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCG          >  1:953513/3‑101 (MQ=0)
          gACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCCCGGATCCGc         >  2:1783745/2‑100 (MQ=0)
          gACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGA         <  2:3319301/100‑1 (MQ=0)
          gACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGA         >  1:134543/2‑101 (MQ=0)
           ACGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGAC        <  2:1842659/101‑1 (MQ=0)
            CGGCCCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACc       <  2:3141772/101‑2 (MQ=0)
            CGGACCCGACCGATCCCCCGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACc       <  2:2300378/101‑2 (MQ=0)
            CGGACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGACc       <  2:1137445/101‑2 (MQ=0)
               ACCCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGATCCGAacgct    >  2:2305204/1‑96 (MQ=0)
                 CCGACCGATCCCACGGATCCGACCGATCCGACGGACCCGACCGATCCTACGGACCCGACCGATCCTACGGATCCGACCGATCCCACGGACCCGACCGATCC  >  1:4039388/1‑101 (MQ=1)
                                              |||||||||||||||||||                                                     
CGACCGATCCCACGGACCCGACCGATCCCACGGATCCGACCGATCC........................................................................  <  NC_014034/222037‑221992
.................................................................ACGGACCCGACCGATCCCACGGATCCGACCGATCCCACGGACCCGACGGACCC  <  NC_014034/222125‑222073

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG