New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2287727	NA (NA)	35 (0.260)	12/120	17.9	0.45	intergenic (‑124/+111)	RCAP_rcc02125/acsA1	hypothetical protein/acetate‑‑CoA ligase
	?	NC_014034	= 2490466	87 (0.380)					intergenic (‑79/+13)	soxD/soxB	sarcosine oxidase subunit delta/sarcosine oxidase subunit beta
Rejected: Position hash score below cutoff.

CCCGTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGG..............................................................................  >  NC_014034/2287688‑2287727 ................................................................................TTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGGGG  <  NC_014034/2490466‑2490429                                         ||||||||||||||||||||||||||||||||||||||||                                       ccgtaAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATC                   >  2:676204/6‑101 (MQ=255) ccgtaAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATC                   >  2:3250975/6‑101 (MQ=255)   gtaAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCC                 <  1:4329284/98‑1 (MQ=255)    taAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCG                >  1:1111404/3‑101 (MQ=12)    taAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCG                <  1:1380848/99‑1 (MQ=255)     aAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGC               <  1:4360921/100‑1 (MQ=16)     aAGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGC               <  1:4164879/100‑1 (MQ=255)      AGCTGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCG              <  2:1758791/101‑1 (MQ=16)       gctGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGG             <  2:3249651/98‑1 (MQ=12)       gctGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGG             >  2:2604944/4‑101 (MQ=12)         tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG           <  2:4337862/100‑1 (MQ=18)         tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG           <  1:3471607/100‑1 (MQ=18)         tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG           >  1:1896173/2‑101 (MQ=17)         tGCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGG           <  1:1103202/100‑1 (MQ=18)          GCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGG          <  2:4366707/101‑1 (MQ=18)          GCGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGG          <  2:1708915/101‑1 (MQ=18)           CGGGGGTTTCCCGCCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGT         <  2:3502447/101‑1 (MQ=255)           CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGT         <  2:3917557/101‑1 (MQ=18)           CGGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGT         <  1:4404817/101‑1 (MQ=17)            GGGGGTTTCACCCCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg        <  1:2393033/101‑2 (MQ=255)            GGGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTg        >  1:2726564/1‑100 (MQ=17)             GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga       <  1:2250471/101‑3 (MQ=12)             GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga       <  2:2143164/101‑3 (MQ=12)             GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga       >  2:2535452/1‑99 (MQ=17)             GGGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTga       <  1:1247464/101‑3 (MQ=12)              GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa      >  2:347415/1‑98 (MQ=12)              GGGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaa      <  1:4370124/101‑4 (MQ=12)               GGTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgact     >  2:4069842/1‑97 (MQ=12)               GGTCTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaat     <  1:1345925/101‑5 (MQ=255)                GTTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaatt    <  2:2220210/101‑6 (MQ=12)                 TTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaattg   <  1:3118506/101‑7 (MQ=255)                 TTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaattg   <  1:2605115/101‑7 (MQ=255)                 TTTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaattg   <  2:80318/101‑7 (MQ=255)                  TTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaattgg  <  1:4166512/101‑8 (MQ=255)                  TTCACACCCCCGCACCCCCGTGGGATATTTGAGGCAAGATGAAAGGAAAAGCCCCTCTTCCCGTTTCACCTTGCCCGAAATATCCCGCGGGGGTgaattgg  <  1:3274378/101‑8 (MQ=255)                                         ||||||||||||||||||||||||||||||||||||||||                                       CCCGTAGCGGCGGGGGTTTCACACCCCCGCACCCCCGTGG..............................................................................  >  NC_014034/2287688‑2287727 ................................................................................TTTCATCTTGCCCGAAATATCCCGCGGGGGTCCGGGGG  <  NC_014034/2490466‑2490429 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG