New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2600952 =	0 (0.000)	55 (0.250)	11/192	27.2	0.39	intergenic (+14/‑127)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
	?	NC_014034	3003969 =	173 (0.770)					intergenic (+15/+161)	gfo/lrp	glucose‑‑fructose oxidoreductase/leucine‑responsive regulatory protein
Rejected: Position hash score below cutoff.

TCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG....................................................................................................  <  NC_014034/2601054‑2600952 ...................................................................................................GGGGGCGCTGCCCCCCTCTTGGCCTGACGGCCAATTCACCCCCCGGGATATTTGGACCAAGGTGAAAGCAGATCCCGGTTTGCCTTTCACCTTGGCGCAAATAT  >  NC_014034/3003969‑3004068                                                                                                                                                                                                                GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     >  2:732125/1‑101 (MQ=1)    GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     <  1:1446566/101‑1 (MQ=1)     ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                    <  2:4209195/101‑1 (MQ=1)     ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                    <  1:4130125/101‑1 (MQ=1)     ATTAGCCGCTGCGCCCCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                    <  2:1110383/101‑1 (MQ=1)      TTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGCG                                                                                                   >  1:4318304/1‑101 (MQ=1)      TTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCG                                                                                                   >  1:638728/1‑101 (MQ=1)       TAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGC                                                                                                  >  1:2707709/1‑101 (MQ=11)        AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCCGGGGGGCg                                                                                                 >  1:2303066/1‑100 (MQ=2)        AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCT                                                                                                 <  2:1376722/101‑1 (MQ=1)        AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCT                                                                                                 <  2:1564365/101‑1 (MQ=1)        AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGGGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggc                                                                                                 >  1:3488826/1‑97 (MQ=2)         GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGGGGGGGGggggc                                                                                                >  2:3924212/1‑96 (MQ=2)           CGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggcggc                                                                                              >  2:2691244/1‑94 (MQ=2)           CGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCC                                                                                              <  1:1727956/101‑1 (MQ=1)           CGCTGCCCCCCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCC                                                                                              <  2:1875840/101‑1 (MQ=0)            gcgGCGCCCCAGCCAAACAGGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                             <  1:2748334/98‑1 (MQ=0)            GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggcggcc                                                                                             >  1:2221309/1‑93 (MQ=9)            GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCCGCgc                                                                                             >  2:3422221/1‑99 (MQ=14)            GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                             <  1:2444409/101‑1 (MQ=1)            GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                             >  1:2008294/1‑101 (MQ=1)            GCTGCCCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                             <  2:3519532/101‑1 (MQ=1)              TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGggggggggcc                                                                                           >  2:3475794/1‑91 (MQ=2)              TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCGGCCCCC                                                                                           >  2:1373577/1‑101 (MQ=0)              TGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCGGCCCCC                                                                                           >  2:3902749/1‑101 (MQ=0)               GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGTCCCCC                                                                                          >  2:2784065/1‑101 (MQ=1)               GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCt                                                                                          <  2:3345049/101‑2 (MQ=1)               GCGCCGCAGCAAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCt                                                                                          <  2:1935756/101‑2 (MQ=1)                CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGGGCTGGCCCCCc                                                                                         >  2:3804767/1‑100 (MQ=0)                CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCGGCCCCCCc                                                                                         >  1:947711/1‑100 (MQ=0)                CGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtc                                                                                         <  2:2213723/101‑3 (MQ=1)                 GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCCGCCCCCtct                                                                                        >  1:4276275/1‑98 (MQ=17)                 GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtct                                                                                        <  2:2159973/101‑4 (MQ=1)                 GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtct                                                                                        <  1:2475465/101‑4 (MQ=1)                  cgGCACCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtctt                                                                                       <  1:3330166/99‑5 (MQ=1)                  CCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtctt                                                                                       <  1:411133/101‑5 (MQ=1)                  CCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtctt                                                                                       <  2:1036040/101‑5 (MQ=1)                  CCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtctt                                                                                       >  2:2731751/1‑97 (MQ=1)                  CCGAAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtctt                                                                                       <  2:1539855/101‑5 (MQ=1)                   CGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGCCCCCCcttg                                                                                      >  2:464377/1‑97 (MQ=14)                    GCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTG.CCCCCTCTTGG                                                                                    >  2:184474/1‑101 (MQ=11)                    GCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGG                                                                                    >  1:1680272/1‑101 (MQ=11)                    GCAGCCAAAAAAGAAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGG                                                                                    <  2:1091868/101‑1 (MQ=2)                     cacCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGC                                                                                   <  1:2480414/98‑1 (MQ=11)                     CAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGC                                                                                   <  2:2308210/101‑1 (MQ=11)                      AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTG.CCCCCTCTTGGCC                                                                                  >  1:1328676/1‑101 (MQ=2)                      AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtctttggc                                                                                   >  2:2775149/1‑93 (MQ=1)                      AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCCTGGCC                                                                                  >  1:3902797/1‑101 (MQ=0)                        CCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTt                                                                                <  2:2708089/101‑2 (MQ=11)                         CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               <  2:638660/101‑3 (MQ=11)                          AAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttg                                                                              >  2:2849065/1‑98 (MQ=2)                           AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttgg                                                                             <  1:1550426/101‑5 (MQ=2)                             CAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCC.CTTGGCCTttggcc                                                                           >  1:189026/1‑95 (MQ=12)                             CAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttggcc                                                                           <  2:3902543/101‑7 (MQ=2)                             CAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttggcc                                                                           >  1:4437761/1‑95 (MQ=2)                                                                                                                                                                                                             TCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG....................................................................................................  <  NC_014034/2601054‑2600952 ...................................................................................................GGGGGCGCTGCCCCCCTCTTGGCCTGACGGCCAATTCACCCCCCGGGATATTTGGACCAAGGTGAAAGCAGATCCCGGTTTGCCTTTCACCTTGGCGCAAATAT  >  NC_014034/3003969‑3004068 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG