New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2697776 =200 (0.960)2 (0.010) 2/184 23.6 0.01 coding (642/1128 nt) RCAP_rcc02512 hypothetical protein
?NC_014035 56693 = 117 (0.890)coding (490/822 nt) nosY cooper ABC transporter permease NosY
Rejected: Position hash score below cutoff.

GTCAGCGCCGACAGATCCCAAGGCTGCAGCGCCGCCATGTAGGCGGGCGGCAACGAGCGCGAGGCATAGATCACCACATCGTCGAAATCGCGCGCGACCCGGCCCGCG....................................................................................................  <  NC_014034/2697883‑2697776
....................................................................................................GGCCCGCGCCGAGATCGCATAGCCCAGCCCAAGGAAAGTGGCGCCAAGCGCGACCGAGGTCCAGATTAGCCGCAACAGCGCGCCAAGCCCCGCGACCGAGGCCGGATC  >  NC_014035/56693‑56792
                                                                                                                                                                                                                
                                             GGCGGCAACGAGCGCGAGGCATAGATCACCACATCGTCGAAATCGCGCGCGACCCGGCCCGCGCCGAGATCGCATAGCCCAGCCCAAGGAAAGTGGCGCCA                                                                >  2:3974436/1‑101 (MQ=255)
                                                GGCAACGAGCGCGAGGCATAGATCACCACATCGTCGAAATCGCGCGCGACCCGGCCCGCGCCGAGATCGCTTAGCCCAGCCCAAGGAAAGTGGCGCCAAGC                                                             <  1:3974692/101‑1 (MQ=255)
                                                                                                                                                                                                                
GTCAGCGCCGACAGATCCCAAGGCTGCAGCGCCGCCATGTAGGCGGGCGGCAACGAGCGCGAGGCATAGATCACCACATCGTCGAAATCGCGCGCGACCCGGCCCGCG....................................................................................................  <  NC_014034/2697883‑2697776
....................................................................................................GGCCCGCGCCGAGATCGCATAGCCCAGCCCAAGGAAAGTGGCGCCAAGCGCGACCGAGGTCCAGATTAGCCGCAACAGCGCGCCAAGCCCCGCGACCGAGGCCGGATC  >  NC_014035/56693‑56792

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG