New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2704461 =	181 (0.880)	2 (0.010)	2/182	34.5	0.01	coding (1410/2049 nt)	RCAP_rcc02519	diguanylate cyclase/phosphodiesterase
	?	NC_014034	= 3422890	218 (0.960)					coding (1564/1935 nt)	capD	polysaccharide biosynthesis protein CapD
Rejected: Position hash score below cutoff.

CATCGCCTTCGTGCAGGACGCCGCGCGCGAGGGCCGGATTCTGGCCTGGTATCAGCCCAAGGTGCGGCTCGAGAGCCGCCGCATCGTCGGCTATGAGGCGCTGGCGCGG....................................................................................................  <  NC_014034/2704569‑2704461 ....................................................................................................CTGGCGCGGCGGCTGATCGAGACTTCGGGCTTCACCGTGCGCGACGCGCGCAACCCCGAGGGCGATATCGAGATCGTCACCACCGGGCTGCGTCCGGGTGAAAAGCTGC  <  NC_014034/3422890‑3422791                                                                                                                                                                                                                                                    CCGGATTCTGGCCTGGTATCAGCCCAAGGTGCGGCTCGAGAGCCGCCGCATCGTCGGCTATGAGGCGCTGGCGCGGCGGCTGATCGAGACTTCGGGGTTCA                                                                             >  2:983152/1‑101 (MQ=255)                                                                     TCGAGAGCCGCCGCATCGTCGGCTATGAGGCGCTGGCGCGGCGGCTGATCGAGACTTCGGGCTTCACCGTGCGCGACGCGCGCAACCCCGAGGGCGATATC                                          <  1:983237/101‑1 (MQ=255)                                                                                                                                                                                                                   CATCGCCTTCGTGCAGGACGCCGCGCGCGAGGGCCGGATTCTGGCCTGGTATCAGCCCAAGGTGCGGCTCGAGAGCCGCCGCATCGTCGGCTATGAGGCGCTGGCGCGG....................................................................................................  <  NC_014034/2704569‑2704461 ....................................................................................................CTGGCGCGGCGGCTGATCGAGACTTCGGGCTTCACCGTGCGCGACGCGCGCAACCCCGAGGGCGATATCGAGATCGTCACCACCGGGCTGCGTCCGGGTGAAAAGCTGC  <  NC_014034/3422890‑3422791 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG