New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2978417 =57 (0.260)2 (0.010) 2/192 35.5 0.01 coding (2335/3159 nt) RCAP_rcc02788 hypothetical protein
?NC_014034 3067757 = 223 (0.990)coding (261/1431 nt) glcD glycolate dehydrogenase, subunit GlcD
Rejected: Position hash score below cutoff.

GCGGGCTCCGTGGCGGCGGGCGGGGTCGCGGCCGCTTTCGCCGCAGCCGCCGCGACCGAGGCCGGGCGGGCTTTCGGCCGGGCGTTTTTCAGCGCCGGATCGGC....................................................................................................  <  NC_014034/2978520‑2978417
....................................................................................................CGGCAAGCGAGGTTCCCGCGCCGCGCGGCACCACCGGAACGCCCATCTCGTGGCACAGCTTCAGGCAGGCCGCGACTTCTTCGGTGGTGCGCGGCAGCACGACC  >  NC_014034/3067757‑3067856
                                                                                                                                                                                                            
                                                                         TCGGCCGGGCGTTTTTCAGCGCCGGATCGGCAAGCGAGGTTCCCGCGCCGCGCGGCACCACCGGAACGCCCATCTCGTGGCACAGCTTCAGGCAGGCCGCG                                >  1:2774864/1‑101 (MQ=255)
                                                                           GGCCGGGCGTTTTTCAGCGCCGGATCGGCAAGCGAGGTTCCCGCGCCGCGCGGCACCACCGGAACGCCCATCTCGTGGCACAGCTTCAGGCAGGCCGCGAC                              <  2:2774674/101‑1 (MQ=255)
                                                                                                                                                                                                            
GCGGGCTCCGTGGCGGCGGGCGGGGTCGCGGCCGCTTTCGCCGCAGCCGCCGCGACCGAGGCCGGGCGGGCTTTCGGCCGGGCGTTTTTCAGCGCCGGATCGGC....................................................................................................  <  NC_014034/2978520‑2978417
....................................................................................................CGGCAAGCGAGGTTCCCGCGCCGCGCGGCACCACCGGAACGCCCATCTCGTGGCACAGCTTCAGGCAGGCCGCGACTTCTTCGGTGGTGCGCGGCAGCACGACC  >  NC_014034/3067757‑3067856

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG