New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2978417 =57 (0.260)2 (0.010) 2/192 35.5 0.01 coding (2335/3159 nt) RCAP_rcc02788 hypothetical protein
?NC_014034 3067757 = 223 (0.990)coding (261/1431 nt) glcD glycolate dehydrogenase, subunit GlcD
Rejected: Position hash score below cutoff.

CACCCTGTTCGAGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACCCCGCCCGCCGCCACGGAGCC  >  NC_014034/2978317‑2978517
                                                                                                       |                                                                                                    
cACCCTGTTCGAGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCcccgcccg                                                                                                      >  2:353009/1‑101 (MQ=255)
cACCCTGTTCGAGGGCACGCCGCAGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCcccgcccg                                                                                                      >  2:250843/1‑101 (MQ=255)
 aCCCTGTTCGAGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCccgcccgc                                                                                                     >  1:768186/1‑101 (MQ=255)
   ccTGTTCGAGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCccgccg                                                                                                   >  1:780269/1‑101 (MQ=255)
   ccTGTGCGGGGGCCCGCCGCGGCCAAAATCAAAC.CG.GCGGCCCGCCTCGGTCAGCCGGG.CCGCGACGGAAGCCGCCGAAGCGCCCGCGGCCCCGCccgccg                                                                                                   <  1:1133014/101‑1 (MQ=255)
    cTGTTCGAGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGa                                                                                                  >  1:3113587/1‑101 (MQ=255)
     tGTTCGAGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGAt                                                                                                 >  2:3375443/1‑101 (MQ=255)
        tCGAGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAACGGCCGCGACCCCGCCCGCCGATCCg                                                                                              >  2:4013280/1‑101 (MQ=255)
           aGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGgcg                                                                                           >  1:1866810/1‑101 (MQ=255)
           aGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGgcg                                                                                           >  1:2245162/1‑101 (MQ=255)
               cACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGa                                                                                       >  1:2366016/1‑101 (MQ=255)
                   ccgccgCCGAAATAGAAC.CC.GCGCCCCGCCTGGGTCAGCCGTC.CCGCGACGGAAGCCGCGGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGaaaaa                                                                                   <  1:2995718/101‑1 (MQ=255)
                        gTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGccc                                                                              >  1:1716093/1‑101 (MQ=255)
                          tgaaatcgaac.CCGGGGGCCGGCCCCGCCCGCCCGTG.CCGCTGCGAAACCCGCGGAACGGGCCGCGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCg                                                                             <  2:3851031/100‑1 (MQ=255)
                            aagccgaac.CC.GGGCCCGGCCTGGGTCAGCGGTG.CCGCGGCGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGcc                                                                          <  2:2245017/97‑1 (MQ=255)
                            aaaacgaaacCC.GCGGCCCGCCGCGGCCACCGGGC.CCGCGAGGGAAGCCGCCGAGGCGCCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGc                                                                           <  2:1730519/101‑1 (MQ=255)
                             gcctcgagccc.GGGGCCCACCCCGGTCCCCCGTA.CCGGGACGGAGGCCGCGGAACCGGCGGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGcc                                                                          <  2:2995039/92‑1 (MQ=255)
                             aatcgaaa.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCg                                                                         >  1:3929060/1‑101 (MQ=255)
                             aaaccaaaccc.GCGCCCCCCCCGGGTCAGCGGTG.CCGCGAGGGAACCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGcc                                                                          <  2:3150495/92‑1 (MQ=255)
                              accgaac.CC.GGGGCCCCCCCGGGTCCGCCGTG.CCGGGACGGAAGCCGCAGAAGCGGCCCCGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGa                                                                        <  2:3614828/99‑1 (MQ=255)
                              acccgacccc.GCCGCCGGGCCCGGTCCCCCGTG.CCGGGGCGGACTCCGCGGAGGCGCCGGCGCCCCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCg                                                                         <  2:2371315/93‑1 (MQ=255)
                                cgaaa.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGaaa                                                                      >  1:2307007/1‑101 (MQ=255)
                                 gaaa.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAg                                                                     >  2:1240009/1‑101 (MQ=255)
                                 caaaccc.GCGCCCCCCCGGGGCCCGCCGTG.CCGCGACGGAAGCCCCGGAAGCGGCCGCGGCCCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGaaa                                                                      <  2:2504452/96‑1 (MQ=255)
                                     ccc.GCGGCCCGCCCGGGTCCGCCGTG.CCGCGAGGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAgccc                                                                  <  2:2130345/100‑1 (MQ=255)
                                       cgtggccccGCCT.GGTCACCCGTG.CCGCGACGGACCCCGCCGAAGCGGCCGCGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAgcccgc                                                                <  2:2202387/95‑1 (MQ=255)
                                        ccgggCCCCCCCCGGGCCGCCGGGCCCGCGAGGGAGCCCGCCGAGGCGCCCGCGCCCCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAgcccg                                                                 <  1:1570682/98‑1 (MQ=255)
                                          cgGCCCGCCTCGGCCAGCCGGG.CCGCGACGAAACCCGCCGAAGCGGCCGCGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAgcccgccc                                                              <  2:3347678/101‑1 (MQ=255)
                                                gccggggcccgCCGTC.CCGCGAGGGAACCCGCGGAAGGGGCGGCGCCCCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTc                                                        <  2:3113363/91‑1 (MQ=255)
                                                 cctgggcccgCCGTG.CGGCGACGAAAGCCCCCGAGGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCg                                                       <  2:2117011/92‑1 (MQ=255)
                                                    cGGTCAGCCGTG.CCGCGACGGGAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTc                                                    >  1:2545289/1‑101 (MQ=255)
                                                    cGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTc                                                    >  1:2501099/1‑101 (MQ=255)
                                                           ccccg.CCGCGCCGGGCGGCGCCGAGGCGCGACCGGACGCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGcggcgg                                             <  2:706456/97‑1 (MQ=255)
                                                            ccgcccggcgACGAACCCCGCCGAAGCGGCCGCGGCCCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGcggcgg                                             <  2:2079752/94‑1 (MQ=255)
                                                            cGTG.CCGGGAGGGAGGCCGCCGGGGCGGCGGCGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCggcggc                                            <  2:768106/101‑1 (MQ=255)
                                                            cGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCggcggc                                            >  2:686650/1‑101 (MQ=255)
                                                             gTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCt                                           >  2:3601313/1‑101 (MQ=255)
                                                              tG.CCTCGACGAAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTg                                          >  1:3854834/1‑101 (MQ=255)
                                                                ccggcgCCGGACCCCGCCGAGGCGCCCGCGCCCCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTgc                                         <  1:1129394/98‑1 (MQ=255)
                                                                  cgcgACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTgcgg                                       >  2:1675834/1‑101 (MQ=255)
                                                                   cggacgaaccccgccgAACGGCCCGCGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTgcggc                                      <  2:2365866/91‑1 (MQ=255)
                                                                      aCGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTgcggcgga                                   >  2:334019/1‑99 (MQ=255)
                                                                       ggaaccccgccgAGGCGCCCGCGCCCCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGaaa                                  <  2:3918517/95‑1 (MQ=255)
                                                                       cGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGaaa                                  >  2:821086/1‑101 (MQ=255)
                                                                        gaaggccgccGAGGCGGCCCCGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAg                                 <  1:353044/97‑1 (MQ=255)
                                                                         gAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGCAAGc                                >  2:2002950/1‑101 (MQ=255)
                                                                            cccgccgGGGCGGCCGCGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGc                             <  1:3116605/100‑1 (MQ=255)
                                                                            cccccggaggcgcccgcgcccCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGACGCGGCGGCTGCGGCGAAAGCGGc                             <  2:3852152/92‑1 (MQ=255)
                                                                            ccccccaaggcgcccgcgcccCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGc                             <  1:3877627/92‑1 (MQ=255)
                                                                             ccgcggACGCGCCCGCGCCCCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGcc                            <  2:1728315/101‑1 (MQ=255)
                                                                             cccccgAGGCGGCCGGGCCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGcc                            <  1:1088838/98‑1 (MQ=255)
                                                                                   aggcgcccgggcccCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGAcc                      <  2:780189/99‑1 (MQ=255)
                                                                                   aaGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGGGGCGAAAGCGGCCGCGAcc                      >  2:855876/1‑101 (MQ=255)
                                                                                     gcggccgcgcccCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGAcccc                    <  1:3375680/101‑1 (MQ=255)
                                                                                      gggccggggccCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACcccg                   <  2:1866686/100‑1 (MQ=255)
                                                                                         cgcccgccCCCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCTGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACcccgccc                <  2:3850567/96‑1 (MQ=255)
                                                                                              gccCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACCCCGCCcgccgc           >  2:3008322/1‑101 (MQ=255)
                                                                                               ccccCCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACCCCGCCCgccgcc          <  2:3928806/101‑1 (MQ=255)
                                                                                                cccgcccgCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACCCCGCCCGCCGCCa         <  1:3846410/101‑1 (MQ=255)
                                                                                                 ccgcccgcGGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGCCCCCGCCCGCCGCCAc        <  1:4013536/101‑1 (MQ=255)
                                                                                                  cgcccgccGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACCCCGCCCGCCGCCACg       >  2:304938/1‑101 (MQ=255)
                                                                                                  ccccggccgATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACCCCGCCCGCCGCCACg       <  2:54031/96‑1 (MQ=255)
                                                                                                     ccgccgATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACCCCGCCCGCCGCCACGGAg    >  2:301/1‑101 (MQ=255)
                                                                                                       gccgATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCCACCCCGCCCGCCGCCACGGAGcc  >  1:2953605/1‑101 (MQ=255)
                                                                                                       |                                                                                                    
CACCCTGTTCGAGGGCACGCCGCCGTCGAAATCGAAA.CC.GCGGCCCGCCTCGGTCAGCCGTG.CCGCGACGGAAGCCGCCGAAGCGGCCGCGGCCCCGCCCGCCGATCCGGCGCTGAAAAACGCCCGGCCGAAAGCCCGCCCGGCCTCGGTCGCGGCGGCTGCGGCGAAAGCGGCCGCGACCCCGCCCGCCGCCACGGAGCC  >  NC_014034/2978317‑2978517

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG