New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392431 =	41 (0.210)	16 (0.080)	12/172	24.4	0.43	intergenic (‑79/+64)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 974293	1 (0.000)					intergenic (+173/+86)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

CGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTG................................................................................................  <  NC_014034/392472‑392431 ............................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGGGGGCGA  <  NC_014034/974293‑974199                                                                                                                                            cgcCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTT                                       <  1:2807701/98‑1 (MQ=0)   cCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTT                                     <  2:401383/100‑1 (MQ=0)   cCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGACGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTT                                     <  1:3600549/100‑1 (MQ=0)     CCGCCGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTat                                   <  1:1719805/101‑3 (MQ=0)      CGCCGGGGGCTCCGCCCCCGGACCCCCGGGATTTTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTT                                  <  1:1787265/101‑1 (MQ=0)        CCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGG                                <  2:3871155/101‑1 (MQ=0)           GGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGC                             <  2:698806/101‑1 (MQ=0)            GGGCTCCGCCCCCGGACCCCCGGAATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCA                            <  2:3255890/101‑1 (MQ=0)             GGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAA                           <  1:4143133/101‑1 (MQ=0)                 CCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATAC                       <  1:2280287/101‑1 (MQ=0)                  CGCCCCCGGACCCCCGGTATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                      <  2:3470574/101‑1 (MQ=0)                  CGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                      <  1:1697544/101‑1 (MQ=0)                     CCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTG                   <  1:1934919/101‑1 (MQ=0)                          gcCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG              <  2:2655610/99‑1 (MQ=0)                          GACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG              >  1:2350016/1‑101 (MQ=0)                          GACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGG              >  1:2907924/1‑101 (MQ=0)                                                                                                                                            CGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTG................................................................................................  <  NC_014034/392472‑392431 ............................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGGGGGCGA  <  NC_014034/974293‑974199 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG