New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392431 =	41 (0.210)	16 (0.080)	12/172	24.4	0.43	intergenic (‑79/+64)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 974293	1 (0.000)					intergenic (+173/+86)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

GCCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGAC  >  NC_014034/974195‑974341                                                                                                     |                                                     ggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGAc                                                     >  2:413542/5‑101 (MQ=255)      cGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTTCCCTTGCGACAAata                                                >  2:337827/1‑101 (MQ=38)      cGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACaaaaa                                                >  1:3866871/1‑99 (MQ=255)       gCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGGTTTTTCCTTTCGACAAatat                                               >  1:3101661/1‑101 (MQ=38)        ccccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCCC.TGGGCAGCGGCTTGTTTTTCCCTTGCGCCAAATATc                                              >  1:3804382/1‑101 (MQ=37)         cccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGCCAAATATcc                                             >  1:2334131/1‑101 (MQ=255)         cccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATcc                                             >  2:4331554/1‑101 (MQ=255)          ccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                            <  1:3074140/101‑1 (MQ=255)          ccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                            <  2:1425318/101‑1 (MQ=255)           cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATTCC.g                                          >  2:2355930/1‑101 (MQ=38)           cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.g                                          <  1:3978683/101‑1 (MQ=255)              ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggg                                       >  1:2964436/1‑101 (MQ=255)                 ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtc                                    <  1:2907924/101‑4 (MQ=255)                 ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtc                                    <  1:2350016/101‑4 (MQ=255)                 ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggggggc                                    >  2:2655610/1‑98 (MQ=255)                      cAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgggg                               >  1:1934919/1‑93 (MQ=38)                                                    ggcgggACCCGGCATGG.CCGCTGCGCAGCGGCTTTTTTTCCCCTTGCGACAAATACCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc  <  1:413582/101‑1 (MQ=2)                                                                                                     |                                                     GCCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG.CCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGAC  >  NC_014034/974195‑974341 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG