New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392448 =	25 (0.120)	26 (0.120)	12/186	25.9	0.44	intergenic (‑96/+47)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	1732717 =	42 (0.190)					intergenic (‑141/‑262)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

GCGAAGCTTTGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCC.GCCGGGGGCTCCGCCCCCG....................................................................................................  <  NC_014034/392550‑392448 .................................................................................................GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAG  >  NC_014034/1732717‑1732816                                                                                                                                                                                                                                                                                        gcGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCG                               <  1:3482338/99‑1 (MQ=39)                                                                             GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTC                             <  1:452265/101‑1 (MQ=39)                                                                             GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTC                             <  2:4239501/101‑1 (MQ=39)                                                                                gacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAAC                          <  1:1576589/93‑1 (MQ=38)                                                                                gacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAAC                          <  2:3954447/93‑1 (MQ=38)                                                                                  cccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAG                        <  1:2785057/95‑1 (MQ=35)                                                                                   ccgggCGGGGGCTCCCCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGG                       <  2:1033515/96‑1 (MQ=21)                                                                                    cgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGC                      <  1:2214088/97‑1 (MQ=33)                                                                                        CGGGGGCTCCTCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGG                  <  2:1408594/101‑1 (MQ=1)                                                                                        CGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGG                  <  1:2137218/101‑1 (MQ=1)                                                                                         GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGG                 >  1:2927042/1‑101 (MQ=1)                                                                                         GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAACGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGGCAACAGGCAAGGG                 >  1:4359490/1‑101 (MQ=0)                                                                                           GGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCC               <  1:345314/101‑1 (MQ=1)                                                                                            GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC              <  1:3384421/101‑1 (MQ=1)                                                                                            GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC              >  1:3446233/1‑101 (MQ=1)                                                                                            GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC              >  2:2670165/1‑101 (MQ=1)                                                                                            GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAAACCCCCCTGCCGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC              >  1:509692/1‑101 (MQ=0)                                                                                             GCTCCGCCCCCGCCCCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGCCCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCC             <  1:2208076/101‑1 (MQ=0)                                                                                             GCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCC             >  2:833814/1‑101 (MQ=1)                                                                                             GCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCC             <  1:2865157/101‑1 (MQ=1)                                                                                              CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCG            >  2:2334415/1‑101 (MQ=1)                                                                                              CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCG            <  1:4119566/101‑1 (MQ=1)                                                                                               TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGC           >  2:2116198/1‑101 (MQ=1)                                                                                               TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGC           >  1:1967848/1‑101 (MQ=1)                                                                                                CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCT          <  1:2889601/101‑1 (MQ=1)                                                                                                 CGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTT         >  2:500592/1‑101 (MQ=1)                                                                                                                                                                                                              GCGAAGCTTTGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCC.GCCGGGGGCTCCGCCCCCG....................................................................................................  <  NC_014034/392550‑392448 .................................................................................................GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAG  >  NC_014034/1732717‑1732816 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG