New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392448 =	25 (0.120)	26 (0.120)	12/186	25.9	0.44	intergenic (‑96/+47)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	1732717 =	42 (0.190)					intergenic (‑141/‑262)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

GCCATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAA  >  NC_014034/392348‑392542                                                                                                       |                                                                                                      gCCATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTcc                                                                                                       <  2:692344/101‑1 (MQ=255) gCCATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTcc                                                                                                       <  1:3639235/101‑1 (MQ=255) gCCATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTcc                                                                                                       <  2:3754313/101‑1 (MQ=255)  ccATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.g                                                                                                     >  1:3580170/1‑101 (MQ=255)   cATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGGCC.gg                                                                                                    >  2:1158819/1‑101 (MQ=255)    aTCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.ggg                                                                                                   <  1:1285215/101‑1 (MQ=255)    aTCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.ggg                                                                                                   <  2:327110/101‑1 (MQ=255)     tCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGTGGGTCC.gggg                                                                                                  >  1:2198585/1‑101 (MQ=255)      cgtaaaTCCCTCCTTGTCACCGCGGAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCCTGCCTCAAATAT.CCCGGGGGTCC.ggggg                                                                                                 <  2:2654214/98‑1 (MQ=255)      cGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCG.TCTTGCCTCAAATAT.CCCGGGGGTCC.ggggg                                                                                                 >  2:1007048/1‑101 (MQ=255)      cGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.ggggg                                                                                                 <  2:2747451/101‑1 (MQ=255)      cGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.ggggg                                                                                                 <  2:1753668/101‑1 (MQ=255)       ggAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGc                                                                                                >  1:3045692/1‑101 (MQ=255)        gAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCg                                                                                               >  1:2451316/1‑101 (MQ=255)          aaTCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGa                                                                                             <  2:4169412/101‑1 (MQ=255)              cctcctTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGccc                                                                                         >  1:2287841/1‑101 (MQ=255)               ctcctTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGcccc                                                                                        >  1:2945448/1‑101 (MQ=255)                   ttGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCc..ggc                                                                                  >  2:705057/1‑101 (MQ=255)                     gTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCc..ggcgg                                                                                >  1:634054/1‑101 (MQ=255)                     gTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCc..ggcgg                                                                                >  1:3116561/1‑101 (MQ=255)                       cACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCgggg                                                                              >  1:2018697/1‑100 (MQ=255)                             gcAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGACTCAAATAT.CCCGGGGGTCC.CGGGGCGGAGCCCCC..GGCGGGGCgagtt                                                                        >  2:683634/1‑97 (MQ=25)                              ggagtctgcgCGGCCAAAGCGGGGGGGACAGTGCCAGCCTATTTCA.CCTACCCTTAAATCC.CCCGGGGGGCG.GGGGGCGGGCCCCCC..GGCGGGTCGCCTCg                                                                       <  2:2054715/92‑1 (MQ=255)                               aaGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCgggggggcgcgg                                                                      >  1:3204842/1‑92 (MQ=255)                               aaGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGCAC.GGGGGGGGAGCCCCC..GGCGGGGCgtggcgg                                                                      >  1:3273239/1‑95 (MQ=37)                                aGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCgggggggcccggg                                                                     >  1:2324663/1‑91 (MQ=255)                                    ctggCGGCCCAAACCGGGGGGAAAATGGCAGGCCATTTTC.TCTTGCC.CAAAAATCCCCGGGGGGCCGGGGGGGGGACCCCCC..GGCGGGTCGCCTCGGCGCa                                                                  <  2:534198/98‑1 (MQ=16)                                     tggagccaaaaaCCGGGGGGACACGGGCCGGCTATTTCG.TCTTCCCTCAAAAGC.CCGGGGGGCCC.GGGGGCGCCCCCCCC..GGCGGGTCGCCTCGGCGCAGc                                                                <  1:1321046/92‑1 (MQ=12)                                             ccaaCCGGGGGGGCAACGTGCGGCCCTTTTATTCTTGCCTAAAATGC.CCGGGGGGTCG.GGGGGGAGGCCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCg                                                        <  2:2945227/99‑1 (MQ=9)                                                                            atcgtccccaaaaTAC.CCGGGGGGCCG.GGGGGCGGGCCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATcc                      <  2:2169086/91‑1 (MQ=21)                                                                                tGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGGGGCCCCCGCGCCGGCC.GCGCGGAAACACCTGTCG.AACCTCC.CCCCC.ACAACCCgcc                  >  2:2886642/1‑101 (MQ=2)                                                                                tGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGGCGGCCCCGCGCCGCCGCGGGGGAAAACCCTTCCCGCAACTTCC.CCCCC.aacccagc                    >  2:2883971/1‑95 (MQ=2)                                                                                         aaaccccGGGGGGCC.GGGGGGGGGGCCCCCCGGGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGt            <  2:633986/97‑1 (MQ=25)                                                                                          at.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGGTGGCCCGGCGCCGCCG.CGGGGGAAAAACCTCACG.AAACTCT.CCCACAAAAACCGCccgccgccccc         >  2:1290965/1‑96 (MQ=2)                                                                                           t.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGGGGCCCCGGGGCGGCCC.CGGGGGAAACAAATGCCG.AAATTCTCCCCCC.AAACCCGCCCCCCGGCcccc        >  1:224692/1‑100 (MQ=2)                                                                                           accccGGGGGGCG.GGGGGGGGGGCCCCCCGGGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTcc          <  2:3204613/99‑1 (MQ=25)                                                                                              gggggggGCG.GGGGGGGGCCCCCCGG.GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCcgcg      <  1:705137/99‑1 (MQ=25)                                                                                                 ggggTCC.GGGGGCGGAGCCCCC..GGCGGGGGGCCTCCGCGCAGGCC.CGCGGGAAACACTTGCCC.CACCCCT.CCCCC.AAAACCCGCCCCCCGGCCcgccccca  >  2:3856438/1‑96 (MQ=9)                                                                                                       |                                                                                                      GCCATCGGAAATCCCTCCTTGTCACCGCGCAAGACTATGCGGCCCAAACCGGAGGGACAATGGCAGGCCATTTCA.TCTTGCCTCAAATAT.CCCGGGGGTCC.GGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGCGCAGCCG.AGGCGAAATCACTTGCCG.AACTTCT.CCCAC.AAATCCGGCCGCCGGTCCCGCGTCAA  >  NC_014034/392348‑392542 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG