New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	408396 =	161 (0.720)	21 (0.090)	5/198	32.7	0.15	intergenic (+14/+134)	glnA1/dapA	glutamine synthetase/dihydrodipicolinate synthase
	?	NC_014034	1640007 =	80 (0.350)					intergenic (+87/‑58)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

CCCCCGTCTTTGCTTTCAGCAAGCCTCCCCCCGGGATATTTGCGGCAAGATGAAGGACATCGGCTTCATCTTGCCGCAAATATCCCGGGGGTCTGGGGGCAG....................................................................................................  <  NC_014034/408497‑408396 .....................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCC  >  NC_014034/1640007‑1640106                                                                                                                                                                                                                                                                                                ggggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCA                   >  1:1215935/11‑101 (MQ=1)                                                                                     ggggggcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCA                   >  1:1648436/11‑101 (MQ=1)                                                                                          gcccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGG              >  1:729367/6‑101 (MQ=1)                                                                                            ccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC            >  2:2692596/4‑101 (MQ=1)                                                                                            ccgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC            >  2:2557792/4‑101 (MQ=1)                                                                                             cgGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC           >  1:2777056/3‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          >  2:3458200/2‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          >  1:2067289/2‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          >  2:2764940/2‑101 (MQ=1)                                                                                              gGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG          >  2:1149489/2‑101 (MQ=1)                                                                                               GGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGA         >  2:3942957/1‑101 (MQ=1)                                                                                               GGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGA         >  2:3170201/1‑101 (MQ=1)                                                                                                GGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAG        >  2:2964591/1‑101 (MQ=1)                                                                                                GGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAG        >  1:1106617/1‑101 (MQ=1)                                                                                                  GGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAT      >  2:1286528/1‑101 (MQ=1)                                                                                                  GGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAT      >  1:3182644/1‑101 (MQ=1)                                                                                                   GCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATC     >  1:1204484/1‑101 (MQ=1)                                                                                                     AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC   >  2:1402525/1‑101 (MQ=1)                                                                                                     AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC   >  1:428419/1‑101 (MQ=1)                                                                                                     AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC   >  1:4175358/1‑101 (MQ=1)                                                                                                     AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC   >  1:2505123/1‑101 (MQ=1)                                                                                                                                                                                                            CCCCCGTCTTTGCTTTCAGCAAGCCTCCCCCCGGGATATTTGCGGCAAGATGAAGGACATCGGCTTCATCTTGCCGCAAATATCCCGGGGGTCTGGGGGCAG....................................................................................................  <  NC_014034/408497‑408396 .....................................................................................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCC  >  NC_014034/1640007‑1640106 Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG