New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744671	47 (0.220)	26 (0.120)	12/186	25.9	0.37	intergenic (+56/+156)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1732717 =	42 (0.190)					intergenic (‑141/‑262)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

ATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCC.GCCGGGGGCTCCGCCCCCG....................................................................................................  >  NC_014034/744565‑744671 .....................................................................................................GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAG  >  NC_014034/1732717‑1732816                                                                                                                                                                                                                                                                                                gcGGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCG                               <  1:3482338/99‑1 (MQ=39)                                                                                 GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTC                             <  1:452265/101‑1 (MQ=39)                                                                                 GGCGACCCGGGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTC                             <  2:4239501/101‑1 (MQ=39)                                                                                    gacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAAC                          <  1:1576589/93‑1 (MQ=38)                                                                                    gacccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAAC                          <  2:3954447/93‑1 (MQ=38)                                                                                      cccgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAG                        <  1:2785057/95‑1 (MQ=35)                                                                                       ccgggCGGGGGCTCCCCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGG                       <  2:1033515/96‑1 (MQ=21)                                                                                        cgggCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGC                      <  1:2214088/97‑1 (MQ=33)                                                                                            CGGGGGCTCCTCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGG                  <  2:1408594/101‑1 (MQ=1)                                                                                            CGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGG                  <  1:2137218/101‑1 (MQ=1)                                                                                             GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGG                 >  1:2927042/1‑101 (MQ=1)                                                                                             GGGGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAACGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGGCAACAGGCAAGGG                 >  1:4359490/1‑101 (MQ=0)                                                                                               GGGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCC               <  1:345314/101‑1 (MQ=1)                                                                                                GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC              <  1:3384421/101‑1 (MQ=1)                                                                                                GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC              >  1:3446233/1‑101 (MQ=1)                                                                                                GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC              >  2:2670165/1‑101 (MQ=1)                                                                                                GGCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAAACCCCCCTGCCGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCC              >  1:509692/1‑101 (MQ=0)                                                                                                 GCTCCGCCCCCGCCCCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGCCCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCC             <  1:2208076/101‑1 (MQ=0)                                                                                                 GCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCC             >  2:833814/1‑101 (MQ=1)                                                                                                 GCTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCC             <  1:2865157/101‑1 (MQ=1)                                                                                                  CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCG            >  2:2334415/1‑101 (MQ=1)                                                                                                  CTCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCG            <  1:4119566/101‑1 (MQ=1)                                                                                                   TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGC           >  2:2116198/1‑101 (MQ=1)                                                                                                   TCCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGC           >  1:1967848/1‑101 (MQ=1)                                                                                                    CCGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCT          <  1:2889601/101‑1 (MQ=1)                                                                                                     CGCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTT         >  2:500592/1‑101 (MQ=1)                                                                                                                                                                                                                  ATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCC.GCCGGGGGCTCCGCCCCCG....................................................................................................  >  NC_014034/744565‑744671 .....................................................................................................GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAG  >  NC_014034/1732717‑1732816 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG