New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744671	47 (0.220)	26 (0.120)	12/186	25.9	0.37	intergenic (+56/+156)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1732717 =	42 (0.190)					intergenic (‑141/‑262)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

ATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGG  >  NC_014034/744571‑744769                                                                                                      |                                                                                                   atggggcagccCCGCAACATGATCTTCCCGCCGGTGCCGGCCTGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCg                                                                                                    <  2:3061059/96‑1 (MQ=25) accGAGCAGCCCCGCGACATGTTTTTCCCGCCGGTGCCGGCCTGAGTTTCCGCCCGGGGCCCGCTGGCCCCTGGGGCGCCCCGCCGGGGGCTCCG.CCCCCg                                                                                                    <  1:19598/99‑1 (MQ=19)       cgccccgccgACATGTTCTTCCGGCGGGGGCCGGCCGGAGTTTCCGCCGGGGGCGCCCTTGCCCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGAcccc                                                                                              <  1:3192187/93‑1 (MQ=12)        agcaCCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGGTCCG.CCCCCGGGccccc                                                                                             >  2:1452110/1‑101 (MQ=255)         cgaCCGAGACATGTTCTTCCCGGCGGGGCCGGCTTGAGATTTCGCCCGGGGCGCGCTTCCCCCCGGGGCCCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCg                                                                                            <  1:3545900/99‑1 (MQ=16)         cccccGCGACGTGATCTTCCCGCCGGGGCCGGCCTGAGATTCCGCCCGGGGCGCGCTTGCCCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCg                                                                                            <  2:1979812/98‑1 (MQ=25)            ccgttaCATGTTCTTCCCGCCGGTGCCGGCCTGGGTTTCCGCCGGGGGCGCGCTTGCGCCGGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGa                                                                                         <  2:2364372/96‑1 (MQ=18)             cgcgACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGGGCCC.CCCCCCGACCCCCcggca                                                                                        >  2:1203875/1‑99 (MQ=38)               cgACATGTTCTTCCCGCCGGTGCCGGCCTGAGATTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGatat                                                                                      <  2:4086688/101‑1 (MQ=37)                gACATGTTCTTCCCGCCGGTGACGGCCTGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATAtt                                                                                     <  2:3839195/101‑1 (MQ=37)                 aCATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGGCCCG.CCCCCGGCCCCCCCGGGTAttt                                                                                    >  1:3492117/1‑101 (MQ=38)                 aCATGATCTTCCCGCCGGTGCCGGCCTGAGATTCCGCCCGGGCCGCGCTTGCCCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATAttt                                                                                    <  2:901553/101‑1 (MQ=25)                  cATGATCTTCCCGCCGGTGACGGCCTGAGATTTCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTg                                                                                   <  2:2428133/101‑1 (MQ=255)                   aTGTTCTTTCCGCCGGTGGCGCCCTGAGATTCCGCCCGGGGCGCGCTTGCCCCTGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTgg                                                                                  <  1:67831/101‑1 (MQ=25)                   aTGTTCTTCCCGCGGGGGACGGCGTGAGTTTTCGCCCGGGGCCCGCTGGCGCCTGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTgg                                                                                  <  1:2125448/101‑1 (MQ=18)                   aTGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGGCCCGCCCCCCGGCCCCCCggggattttg                                                                                   >  1:128731/1‑94 (MQ=37)                    ttttttccccgcggGTGCGGGCCTGGGATTCCACCGGGGGCGCGCTGCCCCCTCGGGCAACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTggg                                                                                 <  2:2887454/93‑1 (MQ=12)                       tCTTCCCGCGGGTGGCGGCCTGAGATTTCGCCCGGGGCGCGCTGGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCa                                                                              <  1:635542/101‑1 (MQ=25)                        cTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGGCCCCCGGGATATTTGGGGCaa                                                                             >  2:2214964/1‑101 (MQ=255)                         tttCCGCCGGTGACGGCCTGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAg                                                                            <  1:2943723/101‑1 (MQ=255)                              gccgGTGGCGGCCTGAGTTTGCGCCGGGGGCGCGCTGGCCCCGGGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaa                                                                       <  1:1203968/101‑1 (MQ=18)                              gccgGTGGCGGCCTGAGATTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaa                                                                       <  2:2897948/101‑1 (MQ=255)                                cgggggcGGCCTGAGCTTGCGCCCGGGGCCCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaat                                                                     <  1:3221075/95‑1 (MQ=21)                                    gccGGCCGGAGTTTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaat                                                                 <  1:2330314/99‑1 (MQ=255)                                     gcgcccggagaTTCCCCCCGGGGCGCGCTTGCCCCCCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                                <  2:2501238/94‑1 (MQ=18)                                     aCGGCCGGAGTTTCCGCCCGGGGCGCGCTTGCGCCGCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                                <  1:776081/101‑1 (MQ=21)                                         ccTGAGTTTTCGCCGGGGGCGCGCTGGCGCCTCGGGCCCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                                            <  1:3051089/101‑1 (MQ=21)                                         ccTGAGGTTCCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                                            <  1:2227241/101‑1 (MQ=255)                                                  tCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                                   >  2:2070494/1‑101 (MQ=255)                                                  ccGCCGGGGGCGCCCTCGCGCCCGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                                   <  2:2486506/100‑1 (MQ=18)                                                      cgggggCGCGCTTGCCCCTGGGGCCCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgcggcg                                               <  2:727829/99‑1 (MQ=21)                                                        ggggCGCGCTCGCGCCTGGGGCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGt                                             <  2:962129/101‑1 (MQ=255)                                                                           ggCGCCCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTg                          <  1:2215103/101‑1 (MQ=255)                                                                              gACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCtt                       <  1:4173630/101‑1 (MQ=255)                                                                                cccGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCtttt                     <  1:1605573/101‑1 (MQ=255)                                                                                  cgccgGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATCACTTTCCGTCTGCTGCGGTACAGCCTGTCCCACCCCTGCTTTTcc                   <  1:3984666/101‑1 (MQ=255)                                                                                   gccgGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCt                  <  1:2887413/101‑1 (MQ=255)                                                                                      gggggCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTgg               <  1:3399419/101‑1 (MQ=255)                                                                                      gggggCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTgg               >  1:2779266/1‑101 (MQ=255)                                                                                       ggggCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGc              <  1:2776080/101‑1 (MQ=255)                                                                                        gttcTCCC.CCCCCGTACCCCCGGGATATTTGGGGCAAGATCAAATGAATGGCTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa             <  1:4421664/98‑1 (MQ=38)                                                                                        gggCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa             <  1:322634/101‑1 (MQ=255)                                                                                           cTCCG.CCCCCGGACCCCCTGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCaaaa          <  2:742482/101‑1 (MQ=255)                                                                                            tCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAAt         <  1:2095845/101‑1 (MQ=255)                                                                                              cG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATAc       <  1:1452217/101‑1 (MQ=255)                                                                                              cG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATAc       <  2:861998/101‑1 (MQ=255)                                                                                              cG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATAc       <  2:1886460/101‑1 (MQ=255)                                                                                               g.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACg      >  1:2030322/1‑101 (MQ=255)                                                                                               g.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACg      <  2:485406/101‑1 (MQ=255)                                                                                                   cccGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCg   <  2:2030185/101‑1 (MQ=255)                                                                                                    ccGGACCCCCGGGATATTTGGGGCAAGATGAAAGGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCgg  <  1:3820192/101‑1 (MQ=255)                                                                                                      |                                                                                                   ATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCCTGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCGGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGG  >  NC_014034/744571‑744769 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG