New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744769 =	18 (0.090)	40 (0.200)	3/178	32.9	0.62	intergenic (+154/+58)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1253881	31 (0.140)					intergenic (+39/+52)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

TTGCCGCGGATGGGCTTTCAGGGATGATTCTGGACTGGCTCGAGGGGTGAGATTTCGCCTCGGGCAGGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCC....................................................................................................  <  NC_014034/744876‑744769 ...................................................................................................CGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCACCATCGCGGCG  <  NC_014034/1253881‑1253782                                                                                                                                                                                                                                                                                        CGAGGCGACCCGGCGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCG                                      <  2:4087145/101‑1 (MQ=32)                                                                        GAGGCGACCCGGCGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGG                                     <  1:2332204/101‑1 (MQ=32)                                                                           GCGACCCGGCGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCT                                  <  1:3919943/101‑1 (MQ=32)                                                                            CGACCCGGCGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTG                                 <  1:2299014/101‑1 (MQ=32)                                                                             GACCCGGCGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGG                                <  2:3607159/101‑1 (MQ=32)                                                                                ccggcGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAG                             <  1:2923627/96‑1 (MQ=32)                                                                                 cggcGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGC                            <  1:3076247/97‑1 (MQ=32)                                                                                 cggcGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGC                            <  2:2106422/97‑1 (MQ=32)                                                                                   gcGGGGGCTCCG.CCCCCGCCCCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCG                          <  2:1656170/99‑1 (MQ=11)                                                                                   gcGGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCG                          <  2:2278980/99‑1 (MQ=11)                                                                                     GGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                        >  2:3656738/1‑101 (MQ=1)                                                                                     GGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                        >  2:511076/1‑101 (MQ=1)                                                                                     GGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                        >  2:2663262/1‑101 (MQ=1)                                                                                     GGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                        <  1:2736690/101‑1 (MQ=1)                                                                                     GGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                        >  1:3929850/1‑101 (MQ=1)                                                                                     GGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAG                        <  1:548740/101‑1 (MQ=1)                                                                                     GGGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGGCTGGAAGCCGAG                        >  2:3259412/1‑101 (MQ=1)                                                                                      GGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGC                       >  2:2798068/1‑101 (MQ=1)                                                                                      GGGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGC                       <  2:1276243/101‑1 (MQ=1)                                                                                       GGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCT                      >  2:1308890/1‑101 (MQ=1)                                                                                       GGGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCT                      >  2:1055339/1‑101 (MQ=1)                                                                                        GGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTT                     >  1:4206463/1‑101 (MQ=1)                                                                                        GGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTT                     >  2:2147067/1‑101 (MQ=1)                                                                                        GGCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGATT                     >  2:2655417/1‑101 (MQ=1)                                                                                         GCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTG                    >  2:1137939/1‑101 (MQ=1)                                                                                         GCTCCG.CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTG                    <  2:3477162/101‑1 (MQ=1)                                                                                            tccgCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGGCGAGCTTGCC                  >  2:3127795/5‑101 (MQ=1)                                                                                            tccgCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCC                  >  2:1676101/5‑101 (MQ=1)                                                                                            tccgCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCC                  >  1:3086969/5‑101 (MQ=1)                                                                                             ccgCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCC                 >  1:2175364/4‑101 (MQ=1)                                                                                              cgCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCA                >  1:99134/3‑101 (MQ=1)                                                                                              cgCCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCA                >  1:304345/3‑101 (MQ=1)                                                                                              cgCCCCCGCACCCCCGAGGGATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGGCTGGAAGCCGAGCTTGCCCA                >  1:2716882/3‑101 (MQ=0)                                                                                                CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGC              >  2:53212/1‑101 (MQ=1)                                                                                                CCCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGC              >  1:2059956/1‑101 (MQ=1)                                                                                                 CCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCA             >  2:2829588/1‑101 (MQ=1)                                                                                                 CCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCA             <  2:2554340/101‑1 (MQ=1)                                                                                                 CCCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCA             >  1:1981245/1‑101 (MQ=1)                                                                                                  CCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCAC            >  2:1482646/1‑101 (MQ=1)                                                                                                  CCCGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCAC            <  1:3004662/101‑1 (MQ=1)                                                                                                                                                                                                                  TTGCCGCGGATGGGCTTTCAGGGATGATTCTGGACTGGCTCGAGGGGTGAGATTTCGCCTCGGGCAGGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCC....................................................................................................  <  NC_014034/744876‑744769 ...................................................................................................CGCACCCCCGAGGTATTTAGGGCAAGATGAGAGCGGGGCGGGATCGGTTTATTTCGCCTCGAAGGCGCAGCCGGTCTGGAAGCCGAGCTTGCCCAGCACCATCGCGGCG  <  NC_014034/1253881‑1253782 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG