New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744769 =	18 (0.090)	40 (0.200)	3/178	32.9	0.62	intergenic (+154/+58)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1253881	31 (0.140)					intergenic (+39/+52)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

CCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCC  >  NC_014034/744669‑744865                                                                                                     |                                                                                                  ccGGACCCCCGGGATATTTGGGGCAAGATGAAAGGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCgg                                                                                                   <  1:3820192/101‑1 (MQ=255)    gACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCggggg                                                                                                <  2:4126948/101‑1 (MQ=255)    gACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCggggg                                                                                                <  2:2109977/101‑1 (MQ=255)     aCCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCgggggg                                                                                               <  1:2048680/101‑1 (MQ=255)      cccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGt                                                                                              <  2:1729936/101‑1 (MQ=255)       ccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTg                                                                                             <  1:127936/101‑1 (MQ=255)       ccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTg                                                                                             <  1:4254552/101‑1 (MQ=255)        cccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGc                                                                                            <  1:2418486/101‑1 (MQ=255)                 tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg                                                                                   <  2:3432843/101‑1 (MQ=255)                 tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg                                                                                   <  2:3491877/101‑1 (MQ=255)                 tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg                                                                                   <  1:2395118/101‑1 (MQ=255)                  ttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGa                                                                                  <  1:2070631/101‑1 (MQ=255)                      ggCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGccc                                                                              <  2:128710/101‑1 (MQ=255)                         aaGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGcccccc                                                                           <  1:1907670/101‑1 (MQ=255)                         aaGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGcccccc                                                                           <  1:1891917/101‑1 (MQ=255)                                                 cTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCTCGGGCCTG.CCCgg                                                  >  1:3595621/1‑100 (MQ=255)                                                           aCAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGGCCTG.CCCGCGGCGGAAtct                                        >  1:2447921/1‑101 (MQ=255)                                                            cAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAgagatcggaag                                       >  1:362360/1‑91 (MQ=255)                                                                gtcgcccCCCCCTTTTTCTCCTGGCCAAAAT.CCCCGGGGGGGGCGGGGGGGGGCCCCCCCGGCGGGTCGCCTCGGGCTTGCCCCGAGGCGAAAtctctcac                                   <  1:1340429/97‑5 (MQ=2)                                                                        ccccTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGCGGCGAAATCTCACCCCTCGAGcc                           >  2:408157/1‑101 (MQ=255)                                                                               ttttCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCCAGCCAGTCCAg                    >  1:2813291/1‑101 (MQ=255)                                                                                   ccTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTG.CCCGAGGCGGAATCTCACCCCTCCAGCCCGGCCAGAatc                >  1:3119455/1‑101 (MQ=21)                                                                                       ggCAAAATACGCAGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTG.CCCGCGGCGAAATCTCACCCCTCGCGCCAGTCCAGAATCATcc            >  1:2420979/1‑101 (MQ=25)                                                                                         cAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGCATCCTCCCt          >  2:810054/1‑101 (MQ=255)                                                                                           aaaTACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCCCGAGCCAGACCCGAATCATCCCTGa        >  2:2345545/1‑101 (MQ=25)                                                                                                 gCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGccc  >  2:3600901/1‑101 (MQ=255)                                                                                                     |                                                                                                  CCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCC  >  NC_014034/744669‑744865 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG