New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	1 (0.000)	16 (0.080)	10/188	27.5	0.25	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	= 1103377	96 (0.420)					intergenic (‑377/+41)	ugpB/regA2	sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA
Rejected: Position hash score below cutoff.

CCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG.................................................................................................  >  NC_014034/974203‑974307 ....................................................................................................CCGGGGGTCCGGGGGCGGAGCCCCCGGCGGATCGCCGCGCGGCCGCGCGGCGAAATCGCCCCGAGGCGCCCCCCGCGTTCGGACCTCTCCGTCGCGGCGCCGG  <  NC_014034/1103377‑1103281                                                                                                                                                                                                                     CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGgc                                                                                                >  2:2655610/1‑99 (MQ=0)         CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                <  1:2350016/101‑1 (MQ=0)         CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                <  1:2907924/101‑1 (MQ=0)              CAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGG                                                                                           >  1:1934919/1‑101 (MQ=0)                 CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCG                                                                                        >  1:1697544/1‑101 (MQ=0)                 CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATACCGGGGGTCCGGGGGCG                                                                                        >  2:3470574/1‑101 (MQ=0)                  GTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGG                                                                                       >  1:2280287/1‑101 (MQ=0)                      TTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCC                                                                                   >  1:4143133/1‑101 (MQ=0)                       TGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATTCCGGGGGTCCGGGGGCGGAGCCC                                                                                  >  2:3255890/1‑101 (MQ=0)                        GCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCC                                                                                 >  2:698806/1‑101 (MQ=0)                           CCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGG                                                                              >  2:3871155/1‑101 (MQ=0)                             AAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAAAATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCG                                                                            >  1:1787265/1‑101 (MQ=0)                              atAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGGCCGGGGGCGGAGCCCCCGGCGG                                                                           >  1:1719805/3‑101 (MQ=0)                                AAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGTCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGgg                                                                         >  1:3600549/1‑99 (MQ=0)                                AAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGgg                                                                         >  2:401383/1‑99 (MQ=0)                                  AAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGggcg                                                                       >  1:2807701/1‑97 (MQ=0)                                                                                                                                                                                                             CCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG.................................................................................................  >  NC_014034/974203‑974307 ....................................................................................................CCGGGGGTCCGGGGGCGGAGCCCCCGGCGGATCGCCGCGCGGCCGCGCGGCGAAATCGCCCCGAGGCGCCCCCCGCGTTCGGACCTCTCCGTCGCGGCGCCGG  <  NC_014034/1103377‑1103281 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 41 ≤  ATCG