New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 9743071 (0.000)16 (0.080) 10/188 27.5 0.25 intergenic (+187/+72) RCAP_rcc00884/RCAP_rcc00885 hypothetical protein/hypothetical protein
?NC_014034 = 1103377 96 (0.420)intergenic (‑377/+41) ugpB/regA2 sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA
Rejected: Position hash score below cutoff.

Only 100 of 108 total aligned reads displayed.

CCGGCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTGCGGGCGGCGA  >  NC_014034/1103281‑1103476
                                                                                                    |                                                                                                    
ccGGCGGCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGGGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGAccccc                                                                                                  <  1:2458096/101‑1 (MQ=255)
ccGGCGCGGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGAccccc                                                                                                  <  2:3958731/101‑1 (MQ=255)
ccGGCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGCccccc                                                                                                  >  2:2443804/1‑101 (MQ=255)
ccGGCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGAccccc                                                                                                  <  1:329545/101‑1 (MQ=255)
ccGGCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGAccccc                                                                                                  <  1:1871946/101‑1 (MQ=255)
 cGGCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCg                                                                                                 <  2:2384623/101‑1 (MQ=255)
 cGGCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCg                                                                                                 <  1:2247187/101‑1 (MQ=255)
  ggCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCg.g                                                                                               <  2:2893570/101‑1 (MQ=255)
  ggCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCg.g                                                                                               <  1:3944564/101‑1 (MQ=255)
  ggCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCg.g                                                                                               <  2:2511232/101‑1 (MQ=255)
   gcgcCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.Gc                                                                                              <  2:3783217/101‑1 (MQ=255)
   agtacgggACGGAGGGGACGGAAGGCGGGGGGGACCTCGGGGGGATTTCGGCCCGCGGCCGGGCGGGGAACCG.GC..GGGGG.CTCCGCCCCCCGGCCCCCG.Gc                                                                                              <  2:4367579/94‑1 (MQ=12)
    cgccgcGACGGAGAGGTCCGAACGCGGGGTGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCg                                                                                             <  2:740202/101‑1 (MQ=255)
    cgccgcGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCg                                                                                             <  2:992952/101‑1 (MQ=255)
    cgccgcGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..CGGGG.CTCCCCCCCCCGGCCCCCG.GCg                                                                                             >  2:215218/1‑101 (MQ=37)
     gccgcGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGt                                                                                            <  1:1142560/101‑1 (MQ=255)
        gcgACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTAtt                                                                                         <  2:51995/101‑1 (MQ=255)
         cgACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTAttt                                                                                        <  2:182162/101‑1 (MQ=255)
          gACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTg                                                                                       <  1:216652/101‑1 (MQ=255)
          gACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CGCCGGCCCCGGACCCCCG.GCGtgattg                                                                                       >  2:1910774/1‑96 (MQ=255)
           aCGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGGATTTgg                                                                                      >  2:2522753/1‑101 (MQ=255)
               agagGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.GTCCGCCCCCGGGCCCCCG.CCGCGTTTTGGccc                                                                                  >  1:4445811/1‑100 (MQ=21)
               agagGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.GGCCGCCCCCCGCACCCCG.CCGGATTTTGGccc                                                                                  >  2:139068/1‑100 (MQ=21)
                gagGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGAGCGGCCGCGCGGCGATCCG.CC..CGGCG.GTCCGCCCCCGGACCCCCG.GCCCAGTTGGGccca                                                                                 >  1:683756/1‑99 (MQ=21)
                 agGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAg                                                                                <  2:194115/101‑1 (MQ=255)
                 agGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAg                                                                                <  1:3657714/101‑1 (MQ=255)
                  ggTCCGACCGGGGGGGGCGAGGCGGGGCAATTCCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGa                                                                               <  2:948258/101‑1 (MQ=14)
                  ggTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCGCCC..GGGGG.GCCCCCCCCCGGCCCCCCGCGCGT.TTTGGGCCaga                                                                                >  1:1688007/1‑99 (MQ=21)
                   gTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGaa                                                                              <  1:198766/101‑1 (MQ=255)
                    tCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCCGGCCCCCG.GCGTCTTTTGGCCAAGaaa                                                                             >  2:1042978/1‑101 (MQ=21)
                      cGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGaaaaa                                                                           <  2:98016/101‑1 (MQ=255)
                      cGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGaaaaa                                                                           <  2:4194569/101‑1 (MQ=255)
                       gAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCCGACCCCCG.GCGCATTTGGGCCAAGaaaaaa                                                                          >  1:2165398/1‑101 (MQ=255)
                       gAACGCGGGGGGCGCCTCCGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..CGGGG.CCCCCCCCCCCGACCGCCG.GCGTACTTGGGGCAAGaaagaa                                                                          >  2:2062921/1‑101 (MQ=18)
                        ggcgcgGCGGGCACGTCGGGGCGATTTCTCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAAc                                                                         <  2:3814882/99‑1 (MQ=17)
                         aCGCGGCGGGCGCCTCGGGGCGTTTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACg                                                                        <  1:721536/101‑1 (MQ=255)
                             ggggggCGCCGCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACggggg                                                                    <  2:281191/101‑1 (MQ=255)
                              gggggCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGc                                                                   <  2:3318669/101‑1 (MQ=255)
                              gggggCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGGATTTGGGCCAAGAAAAAACGGGGGc                                                                   >  2:4398337/1‑101 (MQ=255)
                               ggggCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCGCCC..GGGGGTCCCCCCCCCCGCCCCCCCC.GCGCTTTGGGGCAAAAAAAAAAAggggc                                                                    >  1:3133091/1‑100 (MQ=12)
                                 ggCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCgg                                                                <  1:4139345/101‑1 (MQ=255)
                                     ccTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGAt                                                            <  2:382109/101‑1 (MQ=255)
                                     ccTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGAt                                                            <  1:1715411/101‑1 (MQ=255)
                                     ccTCGGGGCGATTCCGCCGCGCGGCCGCGCGGGGATCCG.CG..GGGGG.CTCCGCGCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGAt                                                            <  2:4415759/101‑1 (MQ=17)
                                      cTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATc                                                           <  2:2071665/101‑1 (MQ=255)
                                        cGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CCCGGGGGG.CCCCCCCCCCGCCCCCCCC.GC.CATTTGGGCCCGAAAAAAACGGGGGGGgggggcgg                                                          >  1:2324798/1‑97 (MQ=9)
                                        cGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGGTCAg                                                         >  2:1922196/1‑101 (MQ=255)
                                        cGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAg                                                         <  2:1214590/101‑1 (MQ=255)
                                            gCGATTTCGCCGCGCGGCCGCGCGGCGATCCGCCC..GGGGG.GGCGCCCCCCCGCCCCCCG.CGGGTTTTGGGCCAGAAAAAAACGGGGGCCgggggcaggccc                                                      >  2:2351449/1‑93 (MQ=9)
                                             cGATTTCGCCGGGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTc                                                    <  1:513800/101‑1 (MQ=255)
                                             cGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTc                                                    <  1:4108201/101‑1 (MQ=255)
                                              gATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCg                                                   <  2:2908268/101‑1 (MQ=255)
                                                tttCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGaa                                                 <  1:1910898/101‑1 (MQ=255)
                                                tttCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGaa                                                 >  2:2595184/1‑101 (MQ=255)
                                                   cgccgcGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATc                                              <  1:448681/101‑1 (MQ=255)
                                                    gccgcgcggccgcgcgGCGATCCG.CT..GGGGG.CCCCCCCCCCCTGGCCGCC.GCGTATTTGGGCCCAAAAAAAAAGGGGGCCGGGGGACAGGCCTCGGAATCg                                             >  1:738511/1‑101 (MQ=9)
                                                      cgcgcggccgcgcggcGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGAt                                           <  2:2111515/101‑1 (MQ=255)
                                                       gcgcggccgcgcggcGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATc                                          <  1:3609007/101‑1 (MQ=255)
                                                           ggccgcgcggcGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATgc                                      <  2:2145670/101‑1 (MQ=255)
                                                             ccgcgcggcGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATgccg                                    <  1:3023824/101‑1 (MQ=255)
                                                               gcgcggcGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATgccgcc                                  <  2:456778/101‑1 (MQ=255)
                                                                cgcggcGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGccc                                 <  2:1135554/101‑1 (MQ=255)
                                                                cgcggcGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGccc                                 <  1:2717832/101‑1 (MQ=255)
                                                                 gcggcgATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCa                                <  1:1773008/101‑1 (MQ=255)
                                                                  cggcgATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAg                               <  1:3119871/101‑1 (MQ=255)
                                                                   ggcgATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAgg                              <  2:1516788/101‑1 (MQ=255)
                                                                      gATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCt                           <  2:2324648/101‑1 (MQ=255)
                                                                       aTCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCtt                          <  1:232047/101‑1 (MQ=255)
                                                                        tCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGCATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCCGTCCTCGAAATCGATCATGCCGCCCAGGTCTTc                         >  2:3239382/1‑101 (MQ=255)
                                                                         ccg.cc..gGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTcg                        <  2:2025106/101‑1 (MQ=255)
                                                                         ccg.cc..gGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTcg                        <  2:4445539/101‑1 (MQ=255)
                                                                         ccg.cc..gGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTcg                        >  1:4146852/1‑101 (MQ=255)
                                                                             cc..gGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTcgccc                     <  2:2254177/101‑1 (MQ=255)
                                                                             cc..gGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTcgccc                     <  1:1120787/101‑1 (MQ=255)
                                                                              c..gGGGG.CTCCGCCCCCCGACCCCCG.TCGTATTTGGGCCAAGAAAAAACCGGGTCCGGGCATCGGTCCTCGAAATCGATCATGCCGCTCAGGTCTTcgaccg                    <  2:33272/101‑1 (MQ=21)
                                                                                 ggggg.CTCCGCCCCCGGACCCCCG.GCGTATTTGGTCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTcgcccgc                   >  1:2585149/1‑101 (MQ=255)
                                                                                 ggggg.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTcgcccgc                   >  2:1238250/1‑101 (MQ=255)
                                                                                     g.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCgccgcc               >  1:2659623/1‑101 (MQ=255)
                                                                                     g.CTCCGCCCCCGGACCCCCG.GCGTATTGGGGCCAAGAAAAAACGGGCGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCcccgcc               >  1:667301/1‑101 (MQ=255)
                                                                                        tCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCtt             <  1:139089/101‑1 (MQ=255)
                                                                                          cGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgc           >  1:1882621/1‑101 (MQ=255)
                                                                                          cGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgc           <  1:2505507/101‑1 (MQ=255)
                                                                                           gCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcg          >  1:2392625/1‑101 (MQ=255)
                                                                                           gCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcg          >  1:231661/1‑101 (MQ=255)
                                                                                            cccccGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcgg         <  1:3239611/101‑1 (MQ=255)
                                                                                            cccccGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcgg         >  1:562973/1‑101 (MQ=255)
                                                                                             ccccGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcggg        >  1:1100628/1‑101 (MQ=255)
                                                                                             ccccGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcggg        >  1:1205176/1‑101 (MQ=255)
                                                                                             ccccGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcggg        >  1:324558/1‑101 (MQ=255)
                                                                                             ccccGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcggg        >  2:2209506/1‑101 (MQ=255)
                                                                                             ccccGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcggg        >  2:3042574/1‑101 (MQ=255)
                                                                                              cccGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcgggc       >  2:2760190/1‑101 (MQ=255)
                                                                                                cGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcgggcgg     >  1:1994409/1‑101 (MQ=255)
                                                                                                cGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTgcgggcgg     >  2:2621142/1‑101 (MQ=255)
                                                                                                 ggACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTGCGggcggc    >  1:3129734/1‑101 (MQ=255)
                                                                                                  gACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTGCGGgcggcg   >  2:2205872/1‑101 (MQ=255)
                                                                                                  gACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTGCGGgcggcg   >  2:2962182/1‑101 (MQ=255)
                                                                                                   aCCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTGCGGGCGGCGa  <  2:1770080/101‑1 (MQ=255)
                                                                                                   aCCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTGCGGGCGGCGa  <  2:2479661/101‑1 (MQ=255)
                                                                                                   aCCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTGCGGGCGGCGa  >  2:533497/1‑101 (MQ=255)
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CCGGCGCCGCGACGGAGAGGTCCGAACGCGGGGGGCGCCTCGGGGCGATTTCGCCGCGCGGCCGCGCGGCGATCCG.CC..GGGGG.CTCCGCCCCCGGACCCCCG.GCGTATTTGGGCCAAGAAAAAACGGGGGCCGGGGATCAGTCCTCGAAATCGATCATGCCGCCCAGGTCTTCGCCCGCCGCCTTGCGGGCGGCGA  >  NC_014034/1103281‑1103476

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG