New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744809	40 (0.220)	11 (0.060)	8/162	26.3	0.30	intergenic (+194/+18)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1193612	12 (0.050)					intergenic (+77/‑174)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
Rejected: Position hash score below cutoff.

CTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCGCC  >  NC_014034/744717‑744909                                                                                             |                                                                                                      cTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCTCGGGCCTG.CCCgg                                                                                              >  1:3595621/1‑100 (MQ=255)           aCAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGGCCTG.CCCGCGGCGGAAtct                                                                                    >  1:2447921/1‑101 (MQ=255)            cAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAgagatcggaag                                                                                   >  1:362360/1‑91 (MQ=255)                gtcgcccCCCCCTTTTTCTCCTGGCCAAAAT.CCCCGGGGGGGGCGGGGGGGGGCCCCCCCGGCGGGTCGCCTCGGGCTTGCCCCGAGGCGAAAtctctcac                                                                               <  1:1340429/97‑5 (MQ=2)                        ccccTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGCGGCGAAATCTCACCCCTCGAGcc                                                                       >  2:408157/1‑101 (MQ=255)                               ttttCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCCAGCCAGTCCAg                                                                >  1:2813291/1‑101 (MQ=255)                                   ccTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTG.CCCGAGGCGGAATCTCACCCCTCCAGCCCGGCCAGAatc                                                            >  1:3119455/1‑101 (MQ=21)                                       ggCAAAATACGCAGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTG.CCCGCGGCGAAATCTCACCCCTCGCGCCAGTCCAGAATCATcc                                                        >  1:2420979/1‑101 (MQ=25)                                         cAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGCATCCTCCCt                                                      >  2:810054/1‑101 (MQ=255)                                           aaaTACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCCCGAGCCAGACCCGAATCATCCCTGa                                                    >  2:2345545/1‑101 (MQ=25)                                                 gCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGccc                                              >  2:3600901/1‑101 (MQ=255)                                                      ggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATccc                                         >  1:1425247/1‑100 (MQ=255)                                                      ggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCCCGGGCCTG.CCCGAGGCGAAATCTCACCCCCCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCcg                                         >  2:2898806/1‑101 (MQ=255)                                                        ggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAAACTCACCCCTCGGGCCAGTCCAGAATCATCCCTGAAAGCCCCTCcgcg                                       >  1:1128257/1‑101 (MQ=255)                                                         gTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                      >  2:2483024/1‑101 (MQ=255)                                                            cGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCaa                                   >  1:1402836/1‑101 (MQ=255)                                                            cGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCaa                                   >  1:1444536/1‑101 (MQ=255)                                                              gggggCGGAGCCCCCCGCGTGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAcc                                 >  1:2293157/1‑101 (MQ=255)                                                                 ggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCCCg                              >  2:3498381/1‑101 (MQ=255)                                                                 ggCGGAGCCCCCCGCGGGTCGCCCCGGGCCTG.CCCGGGGCGAAATCTCAACCCTCGAGCCAGTCCAGAATCATCCCTTAAAGCCCATCCGCTGCAACCTCg                              >  2:4108774/1‑101 (MQ=38)                                                                    ggAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTgg                           >  2:4338778/1‑101 (MQ=255)                                                                    ggAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTgg                           >  1:697002/1‑101 (MQ=255)                                                                    ggAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAAACTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTgg                           >  1:2395367/1‑101 (MQ=255)                                                                     gAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGa                          >  1:4438980/1‑101 (MQ=255)                                                                      aGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGAt                         >  1:121543/1‑101 (MQ=255)                                                                         cccccGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAg                      >  1:2598831/1‑101 (MQ=255)                                                                            ccGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATg                   >  2:3977854/1‑101 (MQ=255)                                                                             ggggggTCGCGTCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGc                  <  2:3595373/98‑1 (MQ=255)                                                                               ggggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc                <  1:408197/100‑1 (MQ=255)                                                                               cgGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc                >  1:172131/1‑101 (MQ=255)                                                                               cgGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc                >  1:2715746/1‑101 (MQ=255)                                                                               cgGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc                >  1:510482/1‑101 (MQ=255)                                                                                gggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccg               >  1:303748/1‑101 (MQ=255)                                                                                gggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccg               >  1:4059895/1‑101 (MQ=255)                                                                                 ggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgc              >  2:1680506/1‑101 (MQ=255)                                                                                 ggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgc              >  1:4254640/1‑101 (MQ=255)                                                                                     gCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc          >  1:1598634/1‑101 (MQ=255)                                                                                      ccTCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCg         <  2:4438708/101‑1 (MQ=255)                                                                                       cTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGa        >  1:1341550/1‑101 (MQ=255)                                                                                        tCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGAt       >  2:1968439/1‑101 (MQ=255)                                                                                         cGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATc      >  2:1300278/1‑101 (MQ=255)                                                                                          gggCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc     >  1:2348035/1‑101 (MQ=255)                                                                                           ggCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATccg    >  1:859791/1‑101 (MQ=255)                                                                                             ccTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATccgcc  >  2:579076/1‑101 (MQ=255)                                                                                             ccTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcagcc  >  2:2116306/1‑101 (MQ=255)                                                                                             |                                                                                                      CTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCGCC  >  NC_014034/744717‑744909 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 21 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG