New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744809	40 (0.220)	11 (0.060)	8/162	26.3	0.30	intergenic (+194/+18)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1193612	12 (0.050)					intergenic (+77/‑174)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
Rejected: Position hash score below cutoff.

AGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCG  >  NC_014034/1193513‑1193683                                                                                                    |                                                                           aGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAg                                                                           <  2:1790953/101‑1 (MQ=255)  ggCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGc                                                                          <  1:1651067/101‑1 (MQ=255)  ggCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGc                                                                          <  1:2873063/101‑1 (MQ=255)   gcgcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGcc                                                                         <  1:1426288/101‑1 (MQ=255)   gcgcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGcc                                                                         <  1:1709668/101‑1 (MQ=255)    cgcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGccc                                                                        <  1:1118679/101‑1 (MQ=255)    cgcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGccc                                                                        <  2:3826521/101‑1 (MQ=255)     gcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCg                                                                       <  1:3726710/101‑1 (MQ=255)     gcTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCg                                                                       <  1:586044/101‑1 (MQ=255)     gcTGAAGAAAGCGGTCTCAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCg                                                                       <  2:4015289/101‑1 (MQ=255)      cTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGa                                                                      <  2:3343720/101‑1 (MQ=255)       tGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAg                                                                     <  1:405857/101‑1 (MQ=255)       tGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAg                                                                     <  1:3652074/101‑1 (MQ=255)       tGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAg                                                                     <  2:3536188/101‑1 (MQ=255)       agaagaaAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAg                                                                     <  1:2616464/100‑1 (MQ=255)        gaagaaAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAgg                                                                    <  2:2801008/101‑1 (MQ=255)        gaagaaAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAgg                                                                    <  1:2020282/101‑1 (MQ=255)         aagaaAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGc                                                                   <  1:417358/101‑1 (MQ=255)          agaaAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCg                                                                  <  1:2421263/101‑1 (MQ=255)            aaaGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGAc                                                                <  2:1113100/101‑1 (MQ=255)            aaaGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGAc                                                                <  2:2496636/101‑1 (MQ=255)             aaGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGAcc                                                               <  1:3076519/101‑1 (MQ=255)              aGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGAccc                                                              <  2:842110/101‑1 (MQ=255)              aGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGAccc                                                              <  1:2615689/101‑1 (MQ=255)                gggTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgc                                                            <  1:1197851/100‑1 (MQ=255)                cGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgc                                                            >  2:4279649/1‑101 (MQ=255)                   tCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggg                                                      >  1:2953502/1‑101 (MQ=255)                   tCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggg                                                      <  1:2802602/101‑1 (MQ=255)                      gAGCCGGTTTCAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                   <  1:2977286/101‑4 (MQ=255)                        gCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                 <  1:982643/101‑6 (MQ=255)                          cGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                               <  1:2157373/101‑8 (MQ=255)                           ggTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCNACCCGC...cgggtgggtgg                                              >  2:566690/1‑93 (MQ=38)                             tttCAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCTTTTTTCATGCGTTGCAGGATATTTCGCCTGGGGCAAGCCCGAGGCGCCCCGC...ggggggctccgcc                                            <  2:388849/101‑11 (MQ=25)                                 aaaaGATCGCGGGGAAGGGGGCTTCGGCCCCTTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                           <  2:2953281/101‑1 (MQ=21)                                 aaaaGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                           <  2:2167582/101‑1 (MQ=25)                                  aaaGATCCGGGGGAGGGGGGCTTCGGCCCCCTTTTTCAGGCGTTGCAGTATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCg                                          <  1:1454302/101‑1 (MQ=18)                                  aaaGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                          <  2:253596/101‑1 (MQ=25)                                  aaaGACCACGGGGAAGGGGGCTTCGCCCCCCTTTTTCATGCGTTGCAGGATATTCCCCCCCGGGCAACCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                          <  1:2309845/101‑1 (MQ=21)                                   aaGGTCACGGGGAGGGGGTCTTCGGCCCCCTTTTTCATGCTTTGCAGGATATTCCCCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGc                                         <  1:1019749/101‑1 (MQ=18)                                     gATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAc                                       <  2:579644/101‑1 (MQ=21)                                      accggggggAGGGGGCCTTCGCCCCCTTTTTTCATGCTTTGCAGAATTTTCCCCCGGGGGCAAGCCGGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                      <  2:3086991/96‑1 (MQ=9)                                        cACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                    <  1:750574/101‑1 (MQ=21)                                           ggggAGGGGGGCTTCGCCCCCTTTTTTCTTGCGTTGCAGGATTTTTCGCCTGGGGAAGGCCGGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCg                                 <  1:3669991/101‑1 (MQ=9)                                                aGGGGGGTTCGCCCCCCTTTTTCAGGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTa                            <  1:602271/101‑1 (MQ=14)                                                 ggggcCTTCGCCCCCTTTTTTCATGCGTGGCAGGATTTTTCCCCTGGGGAAACCCCGAGGCGACCCGCGGGGGGCTCCG.CCCCCGCACCCCCCGGCGTAtt                          <  2:787410/101‑1 (MQ=9)                                                   gggCTCCGGCCCCCTTTTTCATGCGTTGCAGGATTTTCCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTAttt                         <  1:1866702/101‑1 (MQ=17)                                                        tCGGCCCCCTTTTTCATGCGTGGCAGGATATTTCGCCTCGGGCAAGCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCa                    <  1:2058758/101‑1 (MQ=14)                                                                      cATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAg      <  2:2635209/101‑1 (MQ=14)                                                                          cGTGGCAGGATATTTCCCCTCGGGCACGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCg  <  1:4020388/101‑1 (MQ=11)                                                                                                    |                                                                           AGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCG  >  NC_014034/1193513‑1193683 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG