BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	45 (0.220)	35 (0.170)	8/178	28.1	0.29	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
*	?	NC_014034	= 1748562	123 (0.540)	35 (0.170)	8/178	28.1	0.29	intergenic (‑266/‑132)	RCAP_rcc01616/gppA	hypothetical protein/guanosine‑5'‑triphosphate,3'‑diphosphate pyrophosphatase
Rejected: Position hash score below cutoff.

Only 100 of 119 total aligned reads displayed.


ATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....G.....G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCC  >  NC_014034/1639906‑1640106


aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGCAAGATGAAAACCCTCCCCTTTATCTTTCCCCAAAAAT.TCCGGGGGGGCC.ggg....g.....g                                                                                                                   >  1:2901682/1‑101 (MQ=21)


aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....g                                                                                                                   <  1:3938450/101‑1 (MQ=255)


aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....g                                                                                                                   <  2:1566726/101‑1 (MQ=255)


 tCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....gg                                                                                                                  <  2:2769765/101‑2 (MQ=255)


  cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTTGGGGAAAAAGAAACCCATCCCTTTCATCTTTCCCCCAAAAT.CCCCGGGGGCCC.cgg....g.....ggg                                                                                                                 >  1:2992017/1‑99 (MQ=255)


   ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....ggca                                                                                                                <  2:122781/101‑4 (MQ=255)


   tgccGGATGGGACTTTCGATGCCTCCGGCGGGGATATTGGGGGCAAGATGAAACCCACCCCTTTCATCTGGCCCCAAATAG.CCCGGGGGGCCC.ggg....g.....ggca                                                                                                                <  2:944601/99‑4 (MQ=37)


    tCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....ggcag                                                                                                               <  1:186751/101‑5 (MQ=255)


     ccGGATGTTACTTTCGATGCCTCCGGCGGTAATATTTGGGGCAAGATGAAACCCTTCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....ggcagc                                                                                                              <  2:1534906/101‑6 (MQ=25)


     ccGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGGGAGAAGAAAACCATCCCCTTCATCTTTCCCCCAATAT.CCCCGGGGGCCC.ggg....g.....gggagc                                                                                                              >  2:924695/1‑96 (MQ=255)


     ccGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....ggcagc                                                                                                              <  1:376046/101‑6 (MQ=255)


     ccGGATGTGACTTTCGATGCCTCCGGCGGGGAAATTTTGGGCAAAAAGAAAACCACCCCTTTTATCTTTCCCCCAAAAT.CCCCGGGGGCCC.ggg....g.....gggagg                                                                                                              >  1:1374570/1‑96 (MQ=255)


      cGGATGTGACTTTCGATGCCTCCGGCGGGGGAATTTTGGGCAAGATGAAACCCATCCCTTTCATCTTTCCCCCAATAT.CCCCGGGGGGCC.ggg....g.....gggaggg                                                                                                             >  1:1367492/1‑95 (MQ=25)


       ggATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....ggcagcgc                                                                                                            <  1:1754478/101‑8 (MQ=255)


         aTGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....ggcagcgccc                                                                                                          <  1:1745207/101‑10 (MQ=255)


          tgtgACTTTCGATGCCTCCGGCGGGGGAATTTTGGGGAAGATGAAACCCCTCCCTTTTATCTTTCCCCCAACATCCCCGGGGGGCCC.ggg....g.....gggggggccc                                                                                                          >  1:3587020/1‑92 (MQ=19)


          tgtgACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.ggg....g.....ggcagcgcccc                                                                                                         <  1:1328266/101‑11 (MQ=255)


            tgACTTTCGATGCCTCCGGCGGGGAAATTTTGGGCAAGATGACACCCATCCCTTTCTTCTTTTTCCAAATAT.CCCGCGGGGCCC.GGG....G.....g.....c..gagggcccccc                                                                                                >  2:2181106/1‑91 (MQ=25)


                      tGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACCTccc                                                                                    >  2:2953128/1‑100 (MQ=21)


                       gCCTCCGGCGGGGGTATTTGGGGCAAAATGGAACCCATCCCCTTAATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGGGGGCG.....G.....C..G....C..CCCCCGCCACTTCCGc                                                                                   >  2:1036846/1‑101 (MQ=18)


                           ccGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACg                                                                               >  2:2502061/1‑101 (MQ=21)


                               cggGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGc                                                                           >  2:3046532/1‑101 (MQ=25)


                               cggGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGc                                                                           >  2:2889035/1‑101 (MQ=25)


                                ggggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCa                                                                          >  1:361981/1‑101 (MQ=25)


                                ggggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCa                                                                          >  2:3061947/1‑101 (MQ=25)


                                 gggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAg                                                                         >  1:2493058/1‑101 (MQ=21)


                                  ggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAgc                                                                        >  2:1327615/1‑101 (MQ=25)


                                   gATTTTTGGGGCAAGAAGAACCCCATCCCTTTCCTCTCCCCCCAAATTG.CCGGGGGGGCCG.GGG....G.....GGC...C..GCC..C..CCCCCGCCACTTCCGCCACGGGGCAgcg                                                                       <  1:1286414/101‑1 (MQ=255)


                                   gATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAgcg                                                                       >  1:134956/1‑101 (MQ=25)


                                   gATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAgcg                                                                       >  1:2499140/1‑101 (MQ=25)


                                     tatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGcc                                                                     >  2:34941/1‑101 (MQ=25)


                                     tatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGCGGCAGCGcc                                                                     >  2:2289237/1‑101 (MQ=21)


                                      atTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGccc                                                                    >  1:1050663/1‑101 (MQ=25)


                                       tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGcccc                                                                   >  2:585541/1‑101 (MQ=21)


                                       tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGcccc                                                                   >  2:170794/1‑101 (MQ=25)


                                        ttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                                  >  1:1110828/1‑101 (MQ=21)


                                              cAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                                            >  2:3268462/1‑101 (MQ=25)


                                              cAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                                            >  2:2376427/1‑101 (MQ=25)


                                               aaagataaaCCCCTCCCTTTCCTTCTCCCCCAAACTC.CCGGGGGGGCCC.GGG....G.....GGGCCCC..C....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                                            <  2:3548955/95‑1 (MQ=255)


                                               aaGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg                                                           >  2:928793/1‑101 (MQ=25)


                                                aGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCCGGGG....G.....G.....CA.G....CTGCCCCCGCCACTTCCGCCACGGCGCAGCGCCCCCGCCGTTGa                                                          >  1:2636351/1‑101 (MQ=21)


                                                aGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                                          >  1:307894/1‑101 (MQ=25)


                                                 gacgacccccACCCTTTTCACCTCCCCCAAAAGAC.CCGGGGGGGCCG.GGG....G.....G.....C..CCCCCC..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGAc                                                         <  2:414290/94‑1 (MQ=255)


                                                    aaccccccccccTTTC.TCTTGCCCAAAATTG.CCGGGGGGGCCG.GGG....G.....GGGCCCC..C....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                                      <  2:1156847/92‑1 (MQ=255)


                                                     aaaCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                                     >  2:2497095/1‑101 (MQ=25)


                                                     aaaCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                                     >  1:666993/1‑101 (MQ=25)


                                                      aaCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGTGGCAGCGCCCCCGCCGTTGACGAAgg                                                    >  2:2972586/1‑101 (MQ=18)


                                                      aaCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                                    >  2:3182954/1‑101 (MQ=25)


                                                         ccctCCCTTTTCTCCTTCCCCAAAATG.CCCGGGGGGCCC.GGG....G.....GGGC..C..GCC..C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag                                                  <  1:3708423/98‑1 (MQ=255)


                                                          cgtctttttCACCTTGGCCCAAATAG.CCCGGGGCTCGG.GGG....G.....G.....CCAGCC..C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc                                                <  2:576590/95‑1 (MQ=255)


                                                          cctCCCTTTCCTTCTGCCCCAAATTC.CCCGGGGGGCCG.GGG....G.....GGC...C..GCCC.C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgaga                                                 <  1:4327197/99‑1 (MQ=255)


                                                          cATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCCGCCGTTGACGAAGgaggc                                                >  1:3769237/1‑99 (MQ=21)


                                                           aTCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc                                               >  1:996336/1‑101 (MQ=25)


                                                            cccttttCCTCTCCCCCCAAATCC.CCGGGGGGGCCG.GGG....G.....GGCAC.C..C....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg                                              <  1:1395202/97‑1 (MQ=255)


                                                               cTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGa                                           >  1:4185411/1‑101 (MQ=25)


                                                                tttCGTCTTGCCCCAAATA..CCGGGGGGGCCG.GGG....GGGGCAG.....C..C....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt                                          <  2:2991796/101‑1 (MQ=255)


                                                                 ttCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                                         >  2:1132183/1‑101 (MQ=25)


                                                                    aTCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                                      >  2:3199038/1‑101 (MQ=25)


                                                                    aTCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                                      >  1:2541996/1‑101 (MQ=25)


                                                                     tCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc                                     >  2:3063283/1‑101 (MQ=25)


                                                                     tCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc                                     >  1:3410791/1‑101 (MQ=25)


                                                                     tCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc                                     >  2:1831399/1‑101 (MQ=25)


                                                                      cTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                                    >  2:1631071/1‑101 (MQ=25)


                                                                      cTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                                    >  2:473330/1‑101 (MQ=25)


                                                                      cTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCCGTGACGGAGGGGGCCCCGCTGTTTCa                                    >  2:841184/1‑101 (MQ=16)


                                                                      cTTCCCCCAAATTC.CCGGGGGGGCCC.GGG....G.....GGCCCCC..C....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc                                     <  1:3695515/101‑1 (MQ=255)


                                                                       ttGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGGGACCGCGATGTTTCaa                                   >  2:884845/1‑101 (MQ=25)


                                                                       ttGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaa                                   >  2:309034/1‑101 (MQ=25)


                                                                        tGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                                  >  1:4352643/1‑101 (MQ=25)


                                                                        tGCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCAGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                                  >  1:1886487/1‑101 (MQ=25)


                                                                         gCCCCAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaaa                                 >  1:1805490/1‑101 (MQ=25)


                                                                          ccccAGATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaaaa                                >  1:865870/1‑100 (MQ=25)


                                                                          ccccAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAg                                >  2:2437084/1‑101 (MQ=25)


                                                                           cccAAATAT.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGa                               >  1:4190192/1‑101 (MQ=25)


                                                                                atat.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg                          >  1:3411153/1‑101 (MQ=37)


                                                                                  at.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGCCCGTTGTCGAAGGAGACCGCGCTGTTCTAAAAGATCCTGac                        >  1:3907891/1‑100 (MQ=21)


                                                                                   t.CCCGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATc                       >  2:1498276/1‑101 (MQ=37)


                                                                                      ccGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc                     >  1:2873755/1‑101 (MQ=37)


                                                                                      ccGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc                     >  2:1621041/1‑101 (MQ=37)


                                                                                       cGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc                    >  1:479916/1‑101 (MQ=37)


                                                                                       cGGGGGGCCC.GGG....GGGCA.G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc                    >  2:496413/1‑101 (MQ=37)


                                                                                                     ccggggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGc            >  2:2557792/11‑101 (MQ=255)


                                                                                                     ccggggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGc            >  2:2692596/11‑101 (MQ=255)


                                                                                                       ggggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCg          >  2:2764940/9‑101 (MQ=255)


                                                                                                       ggggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCg          >  2:3458200/9‑101 (MQ=255)


                                                                                                       ggggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCg          >  1:2067289/9‑101 (MQ=255)


                                                                                                       ggggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCg          >  2:1149489/9‑101 (MQ=255)


                                                                                                        gggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCga         >  2:3170201/8‑101 (MQ=255)


                                                                                                        gggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCga         >  2:3942957/8‑101 (MQ=255)


                                                                                                        gggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCC.GATCCGCAACAAGGcccgg        >  2:2061322/8‑98 (MQ=255)


                                                                                                         ggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCgag        >  2:2964591/7‑101 (MQ=255)


                                                                                                         ggggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCgag        >  1:1106617/7‑101 (MQ=255)


                                                                                                           ggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAt      >  1:3182644/5‑101 (MQ=255)


                                                                                                           ggcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAt      >  2:1286528/5‑101 (MQ=255)


                                                                                                            gcag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATc     >  1:1204484/4‑101 (MQ=255)


                                                                                                              ag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGc   >  2:1402525/2‑101 (MQ=255)


                                                                                                              ag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGc   >  1:2505123/2‑101 (MQ=255)


                                                                                                              ag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGc   >  1:428419/2‑101 (MQ=255)


                                                                                                              ag.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGc   >  1:4175358/2‑101 (MQ=255)


                                                                                                               g.....c..g....c..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGcc  >  1:1632232/1‑101 (MQ=255)


ATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCCC.GGG....G.....G.....C..G....C..CCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCC  >  NC_014034/1639906‑1640106

Base quality scores:


ATCG

< 3 ≤


ATCG

< 18 ≤


ATCG

< 27 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG