New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1053750 =	NA (NA)	2 (0.010)	2/186	34.9	0.03	intergenic (‑520/‑60)	RCAP_rcc00957/RCAP_rcc00960	hypothetical protein/IS111A/IS1328/IS1533 family transposase/IS116/IS110/IS902 family transposase
	?	NC_014034	2096625 =	138 (0.610)					coding (371/807 nt)	RCAP_rcc01937	hypothetical protein
Rejected: Position hash score below cutoff.

TGCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGTTTTG  >  NC_014034/1053650‑1053782                                                                                                     |                                 tGCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCa                                  >  2:2336924/1‑101 (MQ=255) tGCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCa                                  >  2:2368397/1‑101 (MQ=255) tGCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCa                                  >  2:4199683/1‑101 (MQ=255) tGCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCa                                  >  1:1327630/1‑101 (MQ=255) tGCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCa                                  <  1:2977191/101‑1 (MQ=255) tGCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCa                                  >  2:3243343/1‑101 (MQ=255)  gCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGTGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCAt                                 >  2:219877/1‑101 (MQ=255)  gCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCAt                                 >  1:3625082/1‑101 (MQ=255)  gCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCAt                                 <  2:3995669/101‑1 (MQ=255)  accACTAAGGTATTCCGGGCCATAGCATGTTAGTTATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCAt                                 <  1:1422563/100‑1 (MQ=255)   ccACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATa                                >  2:3375469/1‑101 (MQ=255)   ccACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATa                                >  2:3635682/1‑101 (MQ=255)   ccACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATa                                <  1:109657/101‑1 (MQ=255)    cACTGGTGTATTGCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTAGGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATaa                               <  1:807917/101‑1 (MQ=255)    cACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATaa                               >  1:3969677/1‑101 (MQ=255)     aCTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAAc                              <  1:4147417/101‑1 (MQ=255)     aCTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAAc                              >  1:3120401/1‑101 (MQ=255)      cTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAAcc                             >  2:1478916/1‑101 (MQ=255)       tGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCa                            >  2:495102/1‑101 (MQ=255)       tGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCa                            >  1:3506998/1‑101 (MQ=255)        gATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAg                           <  1:2514990/101‑1 (MQ=255)        gATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAg                           >  1:871161/1‑101 (MQ=255)        gATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAg                           >  2:4200628/1‑101 (MQ=255)         aTGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAgg                          <  2:3969421/101‑1 (MQ=255)          tGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAggg                         <  2:2583797/101‑1 (MQ=255)          tGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAggg                         <  2:3188063/101‑1 (MQ=255)          tGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAggg                         >  2:98067/1‑101 (MQ=255)          tGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAggg                         <  1:1141177/101‑1 (MQ=255)            tATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCt                       >  1:3104862/1‑101 (MQ=255)            tATTCCGGGCCATAACATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCTGGCGGCCATAACCAGGGCt                       >  2:429465/1‑101 (MQ=255)             aTTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTc                      >  1:1760712/1‑101 (MQ=40)             aTTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTc                      <  1:3033471/101‑1 (MQ=40)             aTTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTc                      <  2:788046/101‑1 (MQ=40)              ttCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCa                     <  2:3421841/101‑1 (MQ=39)              ttCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCa                     >  1:226228/1‑101 (MQ=40)               tCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAg                    <  2:706763/101‑1 (MQ=38)               tCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAg                    >  2:2205822/1‑101 (MQ=39)                ccGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAgg                   <  1:2468347/101‑1 (MQ=37)                ccGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAgg                   >  1:1270421/1‑101 (MQ=38)                ccGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAgg                   >  1:3046334/1‑101 (MQ=38)                ccGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAgg                   <  2:3971382/101‑1 (MQ=37)                ccGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAgg                   >  1:959466/1‑101 (MQ=37)                  gggCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATTGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtc                 >  1:534857/1‑101 (MQ=21)                  gggCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtc                 >  2:13778/1‑101 (MQ=35)                  gggCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtc                 <  1:2767137/101‑1 (MQ=34)                   ggCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtct                <  1:3629348/101‑1 (MQ=33)                   ggCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtct                <  1:2678388/101‑1 (MQ=33)                   ggCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtct                <  2:2081755/101‑1 (MQ=33)                   ggCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtct                >  1:438370/1‑101 (MQ=33)                    gCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtctc               <  2:1413287/101‑1 (MQ=32)                    gCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGtctc               <  2:2943055/101‑1 (MQ=32)                     ccATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTctct              >  2:812247/1‑101 (MQ=32)                     ccATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTctct              <  2:2230152/101‑1 (MQ=32)                      cATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTa             >  1:1588469/1‑101 (MQ=32)                      cATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTa             >  1:299372/1‑101 (MQ=32)                      cATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTa             >  2:2580058/1‑101 (MQ=32)                      cATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTCCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTa             >  2:3705380/1‑101 (MQ=17)                       aTAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAt            >  1:1867174/1‑101 (MQ=32)                       aTAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAt            >  1:3512602/1‑101 (MQ=32)                       aTAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAt            >  1:1224382/1‑101 (MQ=32)                       aTAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAt            >  1:67043/1‑101 (MQ=32)                       aTAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAt            >  1:660359/1‑101 (MQ=32)                        tAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtg           >  2:3518073/1‑101 (MQ=32)                        tAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtg           >  1:1248746/1‑101 (MQ=32)                        tAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtg           >  1:4259756/1‑101 (MQ=32)                        tAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtg           <  1:2493350/101‑1 (MQ=32)                        tAGCATGTTAGTAATGACGCGCCGTTGAAGGATATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtg           >  2:2975741/1‑101 (MQ=17)                         aGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtgg          >  2:2436514/1‑101 (MQ=32)                         aGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtgg          >  2:608520/1‑101 (MQ=32)                         aGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtgg          >  1:2796011/1‑101 (MQ=32)                         aGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtgg          <  2:2774211/101‑1 (MQ=32)                          gCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtggt         >  2:3085136/1‑101 (MQ=32)                          gCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtggt         >  1:2058987/1‑101 (MQ=32)                          gCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCACCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtggt         <  2:485261/101‑1 (MQ=17)                            aTGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtggtgg       >  2:3124049/1‑101 (MQ=32)                            aTGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtggtgg       >  1:3619120/1‑101 (MQ=32)                            aTGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtggtgg       >  1:4145033/1‑101 (MQ=32)                            aTGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtggtgg       <  1:3401246/101‑1 (MQ=32)                            aTGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTAtggtgg       >  2:1739123/1‑101 (MQ=32)                              gTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGtt     <  2:1874434/101‑1 (MQ=32)                               ttAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGttt    <  2:925994/101‑1 (MQ=32)                               ttAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGttt    <  1:2121256/101‑1 (MQ=32)                               ttAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGttt    <  1:2503149/101‑1 (MQ=32)                               ttAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGttt    <  2:2058850/101‑1 (MQ=32)                               ttAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGttt    <  1:710212/101‑1 (MQ=32)                                tAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGtttt   >  2:2238389/1‑101 (MQ=31)                                tAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGtttt   <  2:2220371/101‑1 (MQ=31)                                tAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGtttt   <  1:2940769/101‑1 (MQ=31)                                 aGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGTTTTg  <  2:3618867/101‑1 (MQ=11)                                 aGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGTTTTg  >  1:337310/1‑101 (MQ=11)                                                                                                     |                                 TGCCACTGATGTATTCCGGGCCATAGCATGTTAGTAATGACGCGCCGTTGAAGGTTATGGCCGTCTGCGCAGCCTCCAAAATTGCGCGAGCCAGGCGGCCATAACCAGGGCTCAGGTCTCTATGGTGGTTTTG  >  NC_014034/1053650‑1053782 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG