Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Probable transcription antitermination protein NusG (NCBI)
Functional Annotations (4)
|Transcription antiterminator||cog/ cog|
|transcription elongation regulator activity||go/ molecular_function|
|regulation of transcription, DNA-dependent||go/ biological_process|
Regulation information for RSP_1704(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1704
Module neighborhood information for RSP_1704
|Gene||Common Name||Description||Module membership|
|RSP_0141||RSP_0141||50S ribosomal protein L9 (NCBI)||104, 169|
|RSP_0451||alaS||Alanyl-tRNA synthetase, class IIc (NCBI)||195, 310|
|RSP_0827||RSP_0827||Ribosomal protein L25 (NCBI)||104, 166|
|RSP_0842||RSP_0842||putative porin (NCBI)||43, 310|
|RSP_0910||dctP||TRAP-T family transporter, C4-dicarboxylate-binding protein DctP (NCBI)||310, 363|
|RSP_1043||rpmE||ribosomal protein L31 (NCBI)||169, 310|
|RSP_1044||rplS||50s ribosomal protein L19 (NCBI)||169, 310|
|RSP_1111||rpsO||Ribosomal protein S15 (NCBI)||169, 310|
|RSP_1112||Pnp||polyribonucleotide nucleotidyltransferase (NCBI)||224, 310|
|RSP_1157||PSrp1||Ribosomal subunit interface protein Y (NCBI)||43, 310|
|RSP_1162||RSP_1162||hypothetical protein (NCBI)||104, 169|
|RSP_1163||nusA||N-utilization substance protein A (NCBI)||104, 169|
|RSP_1164||RSP_1164||predicted nucleic-acid-binding protein (NCBI)||104, 212|
|RSP_1165||InfB||Translation Initiation factor 2 (NCBI)||104, 169|
|RSP_1185||RSP_1185||hypothetical protein (NCBI)||242, 310|
|RSP_1699||rpoB||DNA-directed RNA polymerase, beta subunit (NCBI)||104, 169|
|RSP_1700||rplL||50S Ribosomal protein L7/L12 (NCBI)||104, 310|
|RSP_1701||rplJ||Ribosomal protein L10 (NCBI)||169, 310|
|RSP_1702||rplA||Ribosomal protein L1 (NCBI)||104, 169|
|RSP_1703||rplK||Ribosomal protein L11 (NCBI)||104, 169|
|RSP_1704||RSP_1704||Probable transcription antitermination protein NusG (NCBI)||104, 310|
|RSP_1707||tufA||Elongation factor Tu (EF-Tu) (NCBI)||169, 310|
|RSP_1710||rpsL||Ribosomal protein S12 (NCBI)||310, 312|
|RSP_1712||rpoC||RNA polymerase I subunit A, (NCBI)||104, 383|
|RSP_1723||rplP||Ribosomal protein L16 (NCBI)||104, 224|
|RSP_1724||rpmC||Ribosomal protein L29 (NCBI)||310, 312|
|RSP_1732||rpsE||Ribosomal protein S5 (NCBI)||104, 272|
|RSP_1733||rpmD||Ribosomal protein L30 (NCBI)||104, 224|
|RSP_1734||rplO||50S ribosomal protein L15 (NCBI)||104, 224|
|RSP_1764||rplT||Ribosomal protein L20 (NCBI)||169, 310|
|RSP_1765||rpmI||Ribosomal protein L35 (NCBI)||169, 310|
|RSP_1797||YajC||Putative preprotein translocase subunit YajC (NCBI)||224, 310|
|RSP_2310||groES||Chaperonin Cpn10 (GroES) (NCBI)||104, 312|
|RSP_2311||groEL||Chaperonin Cpn60 (GroEL) (NCBI)||104, 312|
|RSP_2693||RSP_2693||Superoxide dismutase, Fe-Mn family (NCBI)||96, 310|
|RSP_2860||rpsB||Ribosomal protein S2 (NCBI)||104, 169|
|RSP_2861||TSF||Translation elongation factor Ts (NCBI)||104, 169|
|RSP_3590||RSP_3590||Ribosomal protein S1 (NCBI)||227, 310|
|RSP_4295||RSP_4295||23S ribosomal RNA (NCBI)||14, 310|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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