Desulfovibrio vulgaris Hildenborough Module 117 Residual: 0.49

Residual: 0.49 Score: -36.6215 version: dvh_cmonkey_11_Mar_02
DVU0110 Sigma-54 dependent transcriptional regulator/response regulator

Details for DVU0110 - Sigma-54 dependent transcriptional regulator/response regulator

GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0110

Tuberculist Genomic Region

DVU3216 Histidine kinase

Details for DVU3216 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3216

Tuberculist Genomic Region

DVU0156 DNA helicase

Details for DVU0156 - DNA helicase

GO Terms: GO:0005524, GO:0004003, GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0156

Tuberculist Genomic Region

DVU0007 Asparagine--tRNA ligase

Details for DVU0007 - Asparagine--tRNA ligase

GO Terms: GO:0005524, GO:0004816, GO:0006421, GO:0005737, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0007

Tuberculist Genomic Region

DVU0326 Hydrogenase expression/formation protein HypE

Details for DVU0326 - Hydrogenase expression/formation protein HypE

GO Terms: GO:0005524, GO:0003824, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0326

Tuberculist Genomic Region

DVU0413 Potassium uptake protein, TrkH family

Details for DVU0413 - Potassium uptake protein, TrkH family

GO Terms: GO:0008324

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0413

Tuberculist Genomic Region

DVU1376 Acetolactate synthase

Details for DVU1376 - Acetolactate synthase

GO Terms: GO:0003984, GO:0050660, GO:0009097, GO:0000287, GO:0030976, GO:0009099

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1376

Tuberculist Genomic Region

DVU0612 STAS domain protein

Details for DVU0612 - STAS domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0612

Tuberculist Genomic Region

DVU1461 Glutamyl-tRNA reductase

Details for DVU1461 - Glutamyl-tRNA reductase

GO Terms: GO:0050661, GO:0008883, GO:0006782

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1461

Tuberculist Genomic Region

DVU0760 Uncharacterized protein

Details for DVU0760 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0760

Tuberculist Genomic Region

DVU1462 Cytochrome c assembly protein, putative

Details for DVU1462 - Cytochrome c assembly protein, putative

GO Terms: GO:0017004, GO:0020037

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1462

Tuberculist Genomic Region

DVU2329 Hydrogenase accessory protein HypB

Details for DVU2329 - Hydrogenase accessory protein HypB

GO Terms: GO:0003924, GO:0016151, GO:0006461

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2329

Tuberculist Genomic Region

DVU1463 Siroheme synthase, N-terminal domain protein

Details for DVU1463 - Siroheme synthase, N-terminal domain protein

GO Terms: GO:0043115, GO:0019354

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1463

Tuberculist Genomic Region

DVU2338 Endonuclease III

Details for DVU2338 - Endonuclease III

GO Terms: GO:0051539, GO:0003677, GO:0003906, GO:0006284, GO:0016798, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2338

Tuberculist Genomic Region

DVU1464 Heptosyltransferase family protein

Details for DVU1464 - Heptosyltransferase family protein

GO Terms: GO:0016757

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1464

Tuberculist Genomic Region

DVU2491 ABC transporter, ATP-binding protein

Details for DVU2491 - ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2491

Tuberculist Genomic Region

DVU1544 Mechanosensitive ion channel family protein

Details for DVU1544 - Mechanosensitive ion channel family protein

GO Terms: GO:0016020, GO:0055085

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1544

Tuberculist Genomic Region

DVU2765 Metallo-beta-lactamase family protein

Details for DVU2765 - Metallo-beta-lactamase family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2765

Tuberculist Genomic Region

DVU1883 Endoribonuclease YbeY

Details for DVU1883 - Endoribonuclease YbeY

GO Terms: GO:0005737, GO:0004521, GO:0004222, GO:0006364, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1883

Tuberculist Genomic Region

DVU2766 Uncharacterized protein

Details for DVU2766 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2766

Tuberculist Genomic Region

DVU2140 Thymidylate kinase

Details for DVU2140 - Thymidylate kinase

GO Terms: GO:0005524, GO:0006233, GO:0006235, GO:0004798

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2140

Tuberculist Genomic Region

DVU2767 Iron-sulfur flavoprotein, putative

Details for DVU2767 - Iron-sulfur flavoprotein, putative

GO Terms: GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2767

Tuberculist Genomic Region

DVU2932 Uncharacterized protein

Details for DVU2932 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2932

Tuberculist Genomic Region

DVU3067 [NiFe] hydrogenase maturation protein HypF

Details for DVU3067 - [NiFe] hydrogenase maturation protein HypF

GO Terms: GO:0016743, GO:0003725, GO:0046944, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3067

Tuberculist Genomic Region

DVU3009 Radical SAM domain protein

Details for DVU3009 - Radical SAM domain protein

GO Terms: GO:0051539, GO:0003824, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3009

Tuberculist Genomic Region

DVU3172 Uncharacterized protein

Details for DVU3172 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3172

Tuberculist Genomic Region

Motif 1: e-value: 7.2 e-value: 130
Regulator Interaction Influence Weight Other Influences
Transcriptional regulatory protein
down-regulates -0.20
Transcriptional regulator, MarR family
up-regulates 0.18
Sigma-54 dependent DNA-binding response regulator
up-regulates 0.14
Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006461 protein complex assembly 6 0.02 1 0.0160
BP GO:0017004 cytochrome complex assembly 6 0.02 1 0.0160
BP GO:0034622 cellular macromolecular complex assembly 6 0.02 1 0.0160
BP GO:0043623 cellular protein complex assembly 6 0.02 1 0.0160
BP GO:0043933 macromolecular complex subunit organizat... 6 0.02 1 0.0160
BP GO:0065003 macromolecular complex assembly 6 0.02 1 0.0160
BP GO:0070271 protein complex biogenesis 6 0.02 1 0.0160
BP GO:0071822 protein complex subunit organization 6 0.02 1 0.0160
BP GO:0022607 cellular component assembly 18 0.05 1 0.0490
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016462 pyrophosphatase activity 3 0.04 1 0.0390
Log in to post comments