Cre03.g189400.t1.2 seryl-tRNA synthetase / serine--tRNA ligase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre03.g189400.t1.2 chromosome_3 seryl-tRNA synthetase / serine--tRNA ligase CDS 5844210 5849925 - 5 715

Phytozome

Locus Genomic View Functional Annotation
Cre03.g189400.t1.2 Cre03.g189400.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
SERRS2, TSS2 g3922.t1, Cre03.g189400.t1.1 JGI206186 30786696 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0105
motif_0105_1

motif_0105_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000014
Motif Bicluster: 
bicluster_0105
Width: 
21
Number of Sites: 
1
Consensus: 
CagCaGcAGCTGcTGgTGCaG
motif_0105_2

motif_0105_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
82
Motif Bicluster: 
bicluster_0105
Width: 
21
Number of Sites: 
1
Consensus: 
TcTtcatcatcacCTtcangT
 0.21
bicluster_0169
motif_0169_1

motif_0169_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0003
Motif Bicluster: 
bicluster_0169
Width: 
14
Number of Sites: 
1
Consensus: 
ACACAcGCACaCgC
motif_0169_2

motif_0169_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.1e-21
Motif Bicluster: 
bicluster_0169
Width: 
21
Number of Sites: 
1
Consensus: 
CaGCacCAgCagCagCggCAg
 0.25

GO Terms

GO:0000166 GO:0004812 GO:0005524 GO:0006418 GO:0004828 GO:0006434 GO:0005737 -

nucleotide binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

aminoacyl-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

tRNA aminoacylation for protein translation

GO Category: 
biological_process
Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

serine-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser).

seryl-tRNA aminoacylation

GO Category: 
biological_process
Details: 
The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI206186

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